Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_F02
         (570 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0004 + 39265-39440,39545-39652,41955-43528,43650-43996,440...    29   3.4  
01_06_0996 + 33667663-33667900,33668019-33668091,33668785-336688...    29   3.4  
02_05_0359 - 28269236-28269541,28270857-28270919,28271439-282714...    28   4.6  
07_01_0476 - 3593555-3594253,3594684-3594850,3594866-3594964,359...    28   6.0  
03_02_0798 - 11321590-11321685,11321802-11321888,11321972-113220...    28   6.0  
07_01_0646 + 4853546-4853623,4853732-4855357,4855467-4855751,485...    27   8.0  
06_03_0734 - 23980576-23980671,23980799-23981338,23981493-239817...    27   8.0  
01_01_1208 + 9733010-9733114,9733920-9733979,9735254-9736280,973...    27   8.0  

>08_01_0004 + 39265-39440,39545-39652,41955-43528,43650-43996,
            44090-44322,45308-45412,45531-45705,46443-46658
          Length = 977

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 16/54 (29%), Positives = 28/54 (51%)
 Frame = +3

Query: 39   LVGVNSRYVLVEEPGYYIEQYEDQPEQWANSRVRRQAGALTVNSDGTSGAMVKV 200
            L G+ SR V    P + ++ Y D+ EQW   R R  +  L ++ + + G+  +V
Sbjct: 886  LTGLGSRIV---SPVFGLQSYSDKGEQWFQLR-RPDSKQLQIDGESSKGSRAEV 935


>01_06_0996 +
           33667663-33667900,33668019-33668091,33668785-33668841,
           33668970-33669067,33669482-33669637,33669744-33670366,
           33670484-33670560,33671551-33671805,33671950-33672067,
           33672174-33672345,33672434-33672975
          Length = 802

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 14/32 (43%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
 Frame = +1

Query: 37  FWSASTA-GTCSLKSLVTTLNNMRISRSSGPT 129
           FW  ST    CS   L+  LNN  +SR +GP+
Sbjct: 40  FWPRSTKWALCSEVDLIGPLNNWTLSRLTGPS 71


>02_05_0359 -
           28269236-28269541,28270857-28270919,28271439-28271459,
           28271660-28271716,28271789-28271874,28271982-28272039,
           28272176-28272311,28272799-28273073,28273564-28273602,
           28274052-28274143,28274422-28274454,28275041-28275088,
           28275191-28275323
          Length = 448

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = -1

Query: 144 AGAPWSWPTAPADPHIVQCSNQALQRARTG 55
           AG PW+W  +PA   + +C   A +R  TG
Sbjct: 408 AGGPWTWRESPASRAMQKC--PACKRTHTG 435


>07_01_0476 -
           3593555-3594253,3594684-3594850,3594866-3594964,
           3595620-3595806,3595880-3595948,3596551-3596752,
           3597124-3597362,3598374-3598637
          Length = 641

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +2

Query: 128 LQGAPASGCTNCQLRRHLRCYGQGTYN 208
           L G P  G  N  +  +LRCYG  +Y+
Sbjct: 302 LNGVPGCGFLNHAINLYLRCYGSLSYH 328


>03_02_0798 -
           11321590-11321685,11321802-11321888,11321972-11322082,
           11322169-11322515,11322570-11322612,11322669-11322749,
           11323321-11323596,11325277-11325552
          Length = 438

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = -1

Query: 150 PLAGAPWSWPTAPADPHIVQCSNQALQR 67
           PL+GAP   P AP  P  + C   AL +
Sbjct: 15  PLSGAPRRRPAAPTRPSALVCGTYALTK 42


>07_01_0646 +
           4853546-4853623,4853732-4855357,4855467-4855751,
           4856131-4856277
          Length = 711

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 18/58 (31%), Positives = 26/58 (44%)
 Frame = +3

Query: 147 AGALTVNSDGTSGAMVKVPITGNENHRLSALGSVDLTNQMKLGAATAGLAYDNVNGHG 320
           AG  + +     G  V   + G +NH +S +G          GA TAG AY+ +N  G
Sbjct: 178 AGHSSTSISAALGMAVARDLLGKKNHVISVIGD---------GAMTAGQAYEAMNNSG 226


>06_03_0734 -
           23980576-23980671,23980799-23981338,23981493-23981714,
           23981791-23982144,23982460-23982546
          Length = 432

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 15/48 (31%), Positives = 24/48 (50%)
 Frame = +3

Query: 354 GDKMTAAGKVNLFHNDDHDFSAKAFATKNLPNIPQVPNFKHCRCRSGL 497
           GD+++AA +     +DD   S K+F T  +P  PQ       R  +G+
Sbjct: 49  GDEISAAAEDENDDDDDGTVSVKSFETCAMPQEPQAAALTVARPANGV 96


>01_01_1208 +
           9733010-9733114,9733920-9733979,9735254-9736280,
           9736332-9736621
          Length = 493

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 20/61 (32%), Positives = 27/61 (44%), Gaps = 1/61 (1%)
 Frame = -3

Query: 313 PFTLS*ANPAVAAPNFIWLVRSTEPRALSL*FSF-PVIGTLTIAPEVPSELTVSAPACRR 137
           P TL   +PA AA + IW     +P    +  SF P +     APE P  L  +  A  R
Sbjct: 426 PKTLRIDDPAEAAKSSIWATLGIKPDDKGIFKSFQPNVAKNGTAPESPQALQANPAAFSR 485

Query: 136 T 134
           +
Sbjct: 486 S 486


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,245,978
Number of Sequences: 37544
Number of extensions: 345411
Number of successful extensions: 895
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 872
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 895
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1317005676
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)