Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_F02
         (570 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z99288-10|CAB16552.2|  338|Caenorhabditis elegans Hypothetical p...    29   1.8  
Z81483-7|CAB03964.2|  338|Caenorhabditis elegans Hypothetical pr...    29   1.8  
AL117204-13|CAB55128.1|  286|Caenorhabditis elegans Hypothetical...    28   4.1  
AF016425-6|AAY86242.1|  104|Caenorhabditis elegans Hypothetical ...    28   5.4  
Z49132-7|CAA88986.1|  403|Caenorhabditis elegans Hypothetical pr...    27   7.2  

>Z99288-10|CAB16552.2|  338|Caenorhabditis elegans Hypothetical
           protein ZK262.11 protein.
          Length = 338

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 16/35 (45%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
 Frame = -3

Query: 475 CLKFGT*GIFGRFLVANALALK-SWSSLWKRFTLP 374
           CL+F T GI G F     +  K SW  LWK+F  P
Sbjct: 107 CLQFVTLGITGIFENRFRIICKFSWVPLWKKFITP 141


>Z81483-7|CAB03964.2|  338|Caenorhabditis elegans Hypothetical
           protein C43D7.6 protein.
          Length = 338

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 16/35 (45%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
 Frame = -3

Query: 475 CLKFGT*GIFGRFLVANALALK-SWSSLWKRFTLP 374
           CL+F T GI G F     +  K SW  LWK+F  P
Sbjct: 107 CLQFVTLGITGIFENRFRIICKFSWVPLWKKFITP 141


>AL117204-13|CAB55128.1|  286|Caenorhabditis elegans Hypothetical
           protein Y116A8C.22 protein.
          Length = 286

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 13/28 (46%), Positives = 15/28 (53%)
 Frame = +2

Query: 152 CTNCQLRRHLRCYGQGTYNWKRKSQAQC 235
           CT CQ   HL+C G  +  W   SQ QC
Sbjct: 256 CTKCQKWVHLKCTGIRSKQW--NSQFQC 281


>AF016425-6|AAY86242.1|  104|Caenorhabditis elegans Hypothetical
           protein F59A7.11 protein.
          Length = 104

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 16/53 (30%), Positives = 25/53 (47%)
 Frame = +3

Query: 24  LVSVLLVGVNSRYVLVEEPGYYIEQYEDQPEQWANSRVRRQAGALTVNSDGTS 182
           L++ LL  +    V+   PG   +  ED  +     R RR  G  TV +DG++
Sbjct: 4   LINSLLFTIAILAVVWGYPGQQADHVEDLTKNRNEPRARRDLGTETVRADGSA 56


>Z49132-7|CAA88986.1|  403|Caenorhabditis elegans Hypothetical
           protein ZK666.7 protein.
          Length = 403

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
 Frame = +3

Query: 252 LTNQMKLGAATAGLAY--DNVNGHGATLTKTHIPGF 353
           L  +MK+  A A +AY  DNVNG    L++   PG+
Sbjct: 180 LATRMKVDVAIATVAYGQDNVNGFLRQLSQIATPGY 215


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,558,312
Number of Sequences: 27780
Number of extensions: 282055
Number of successful extensions: 793
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 760
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 793
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1187327456
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)