Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_F02
         (570 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g25510.1 68418.m03035 serine/threonine protein phosphatase 2A...    29   1.7  
At4g22300.1 68417.m03225 phospholipase/carboxylesterase family p...    27   6.7  
At4g21440.1 68417.m03099 myb family transcription factor (MYB102...    27   8.8  
At3g50080.1 68416.m05475 F-box family protein (FBL16) contains s...    27   8.8  
At1g13460.2 68414.m01575 serine/threonine protein phosphatase 2A...    27   8.8  
At1g13460.1 68414.m01574 serine/threonine protein phosphatase 2A...    27   8.8  

>At5g25510.1 68418.m03035 serine/threonine protein phosphatase 2A
           (PP2A) regulatory subunit B', putative similar to
           SWISS-PROT:Q28653 serine/threonine protein phosphatase
           2A, 56 kDa regulatory subunit, delta isoform (PP2A, B
           subunit, B' delta isoform, PP2A, B subunit, B56 delta
           isoform, PP2A, B subunit, PR61 delta isoform, PP2A, B
           subunit, R5 delta isoform, PP2A, B subunit, B'-gamma)
           [Oryctolagus cuniculus]; contains Pfam domain, PF01603:
           Protein phosphatase 2A regulatory B subunit (B56 family)
          Length = 500

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 13/35 (37%), Positives = 21/35 (60%)
 Frame = -3

Query: 487 RHRQCLKFGT*GIFGRFLVANALALKSWSSLWKRF 383
           R R+CLK     ++G+F+V      KS S+++ RF
Sbjct: 218 RERECLKTILHRVYGKFMVHRPFVRKSMSNIFYRF 252


>At4g22300.1 68417.m03225 phospholipase/carboxylesterase family
           protein similar to acyl-protein thioesterase-1 [Homo
           sapiens] GI:9965372; contains Pfam profile PF02230:
           Phospholipase/Carboxylesterase family
          Length = 471

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 12/28 (42%), Positives = 19/28 (67%)
 Frame = -1

Query: 147 LAGAPWSWPTAPADPHIVQCSNQALQRA 64
           L+ A W +P+AP +P  V C+N A+ R+
Sbjct: 31  LSNASWLFPSAPFNP--VTCNNGAVMRS 56


>At4g21440.1 68417.m03099 myb family transcription factor (MYB102)
           contains Pfam profile: PF00249 myb-like DNA-binding
           domain
          Length = 350

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 16/39 (41%), Positives = 20/39 (51%)
 Frame = +1

Query: 13  PSYSSYQFFWSASTAGTCSLKSLVTTLNNMRISRSSGPT 129
           PSYS   F ++ S   T S     TTLN+  I+ SS  T
Sbjct: 285 PSYSDQSFNFANSVLNTPSSSPSPTTLNSSYINSSSCST 323


>At3g50080.1 68416.m05475 F-box family protein (FBL16) contains
           similarity to SKP1 interacting partner 2 GI:10716949
           from [Arabidopsis thaliana]; contains Pfam profile:
           PF00646 F-box domain
          Length = 522

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 9/23 (39%), Positives = 16/23 (69%)
 Frame = -1

Query: 561 ITIKDIGVSGVRRCTNLVLEHVV 493
           + + DIG+ G+ +C+NL   H+V
Sbjct: 267 LQVTDIGLFGISKCSNLETLHIV 289


>At1g13460.2 68414.m01575 serine/threonine protein phosphatase 2A
           (PP2A) regulatory subunit B', putative similar to
           SWISS-PROT:Q28653 serine/threonine protein phosphatase
           2A, 56 kDa regulatory subunit, delta isoform (PP2A, B
           subunit, B' delta isoform, PP2A, B subunit, B56 delta
           isoform, PP2A, B subunit, PR61 delta isoform, PP2A, B
           subunit, R5 delta isoform, PP2A, B subunit, B'-gamma)
           [Oryctolagus cuniculus]; contains Pfam domain, PF01603:
           Protein phosphatase 2A regulatory B subunit (B56 family)
          Length = 492

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = -3

Query: 487 RHRQCLKFGT*GIFGRFLVANALALKSWSSLWKRF 383
           R R CLK     I+G+F+V      KS ++++ RF
Sbjct: 224 RERDCLKTVLHRIYGKFMVHRPFIRKSINNIFYRF 258


>At1g13460.1 68414.m01574 serine/threonine protein phosphatase 2A
           (PP2A) regulatory subunit B', putative similar to
           SWISS-PROT:Q28653 serine/threonine protein phosphatase
           2A, 56 kDa regulatory subunit, delta isoform (PP2A, B
           subunit, B' delta isoform, PP2A, B subunit, B56 delta
           isoform, PP2A, B subunit, PR61 delta isoform, PP2A, B
           subunit, R5 delta isoform, PP2A, B subunit, B'-gamma)
           [Oryctolagus cuniculus]; contains Pfam domain, PF01603:
           Protein phosphatase 2A regulatory B subunit (B56 family)
          Length = 492

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = -3

Query: 487 RHRQCLKFGT*GIFGRFLVANALALKSWSSLWKRF 383
           R R CLK     I+G+F+V      KS ++++ RF
Sbjct: 224 RERDCLKTVLHRIYGKFMVHRPFIRKSINNIFYRF 258


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,776,351
Number of Sequences: 28952
Number of extensions: 263187
Number of successful extensions: 680
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 659
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 680
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1102220672
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)