Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_F01
         (578 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC11D3.18c |||nicotinic acid plasma membrane transporter |Schi...    30   0.21 
SPAC3G6.07 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    27   2.6  
SPBC3D6.10 |apn2||AP-endonuclease Apn2|Schizosaccharomyces pombe...    26   4.6  
SPCC1322.01 ||SPCC23B6.06|3'-5' exonuclease for RNA 3' ss-tail|S...    25   6.1  
SPBC887.12 |||P-type ATPase |Schizosaccharomyces pombe|chr 2|||M...    25   8.0  
SPBC577.10 |||20S proteasome component beta 7|Schizosaccharomyce...    25   8.0  

>SPAC11D3.18c |||nicotinic acid plasma membrane transporter
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 498

 Score = 30.3 bits (65), Expect = 0.21
 Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 3/48 (6%)
 Frame = +3

Query: 156 LYVFI*SIFYIYVSKVCFFVRGKLENYW---TDQRETATIRRGINRRW 290
           +Y+    + +I V    F +  K+EN W    ++RE A IRR IN R+
Sbjct: 222 IYIVEGLVSFIGVPLCLFALPDKMENAWFLTREEREVAIIRRDINARY 269


>SPAC3G6.07 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 125

 Score = 26.6 bits (56), Expect = 2.6
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = +3

Query: 468 SLIFFRFTLLYIFHFNLHLYIYICSANKNKTILLLFI 578
           S + ++ T   IF F+  LYIYI     ++T +L F+
Sbjct: 47  SFVVYKATANTIFQFSYLLYIYIDLTKADQTEVLQFL 83


>SPBC3D6.10 |apn2||AP-endonuclease Apn2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 523

 Score = 25.8 bits (54), Expect = 4.6
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = -3

Query: 396 MFSSFEAMARQKNNKQTN*ENMAKGSEN 313
           MF  F +M + KNN  T  EN++  + +
Sbjct: 341 MFQHFNSMKKNKNNSPTQSENVSASASS 368


>SPCC1322.01 ||SPCC23B6.06|3'-5' exonuclease for RNA 3'
           ss-tail|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 957

 Score = 25.4 bits (53), Expect = 6.1
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = +3

Query: 213 VRGKLENYWTDQRETATIRRGINRRW 290
           +RGKL  Y   ++   TI R INR W
Sbjct: 856 LRGKLNLYNQKEKSIKTIGRYINRFW 881


>SPBC887.12 |||P-type ATPase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1258

 Score = 25.0 bits (52), Expect = 8.0
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = -1

Query: 263 GCGFTLIGPVVFEFTSDKETNFAYIYIEDRLDENVQFARN 144
           G  +  + P   +FTS+   +  YIY  D L EN++ + N
Sbjct: 537 GVAYADVIPEDRQFTSEDLDSDMYIYDFDTLKENLKHSEN 576


>SPBC577.10 |||20S proteasome component beta 7|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 262

 Score = 25.0 bits (52), Expect = 8.0
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +3

Query: 174 SIFYIYVSKVCFFVRGKLENYW 239
           S  + Y+SKV +  R KL+ YW
Sbjct: 121 SYIHEYLSKVLYARRNKLDPYW 142


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,364,823
Number of Sequences: 5004
Number of extensions: 48158
Number of successful extensions: 143
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 140
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 143
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 248115846
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)