Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_F01
         (578 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_0040 + 14360543-14361778,14361787-14362782,14362791-14363657     29   2.0  
11_02_0010 + 7322826-7323658,7324236-7324714,7325204-7326195           29   2.7  
04_01_0414 - 5487688-5488004,5488179-5488382,5488895-5489210           28   6.2  

>10_08_0040 + 14360543-14361778,14361787-14362782,14362791-14363657
          Length = 1032

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = -3

Query: 309 KNI*PITIYD*FRVEWLRFHADRSSSFRVYLGQR 208
           + + P  +YD   V WL +H D   SF ++L QR
Sbjct: 679 RGVSPRRVYDGRSVTWLAYHGDYDLSFLLHLLQR 712


>11_02_0010 + 7322826-7323658,7324236-7324714,7325204-7326195
          Length = 767

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 12/19 (63%), Positives = 14/19 (73%)
 Frame = +3

Query: 306 FSNSLSPSPCFLNLFVYCS 362
           F++S  PSPCFL  FVY S
Sbjct: 581 FADSWCPSPCFLEKFVYKS 599


>04_01_0414 - 5487688-5488004,5488179-5488382,5488895-5489210
          Length = 278

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 12/27 (44%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
 Frame = -1

Query: 425 ALKGIS-PIPICSVVLRRWRVKRTINK 348
           A KG S P P+  +  RRWR+K++ +K
Sbjct: 244 ATKGQSGPHPLVKIEFRRWRIKKSASK 270


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,704,626
Number of Sequences: 37544
Number of extensions: 256526
Number of successful extensions: 621
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 598
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 618
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1352600424
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)