Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_F01
         (578 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_22414| Best HMM Match : Taeniidae_ag (HMM E-Value=5.1)              30   1.2  
SB_54953| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.6  
SB_55491| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.6  
SB_37260| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.6  
SB_3575| Best HMM Match : DUF943 (HMM E-Value=4.5)                     29   3.6  
SB_8119| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   4.8  
SB_42885| Best HMM Match : DUF983 (HMM E-Value=9.7)                    28   4.8  
SB_6447| Best HMM Match : DUF164 (HMM E-Value=0.48)                    28   4.8  
SB_37031| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.3  
SB_31687| Best HMM Match : DUF420 (HMM E-Value=6.3)                    28   6.3  
SB_28087| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.3  
SB_57572| Best HMM Match : RVT_1 (HMM E-Value=1.5e-16)                 28   6.3  
SB_53568| Best HMM Match : Chromadorea_ALT (HMM E-Value=0.61)          27   8.4  
SB_26060| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.4  
SB_2840| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   8.4  

>SB_22414| Best HMM Match : Taeniidae_ag (HMM E-Value=5.1)
          Length = 249

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = -1

Query: 179 DRLDENVQFARNDYDKDDNNDEQQDSCK 96
           D  D+NV    NDY  DDN+    D C+
Sbjct: 134 DDNDDNVNVDGNDYSNDDNDGYDDDDCQ 161


>SB_54953| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 209

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 15/47 (31%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
 Frame = -1

Query: 236 VVFEFTSDKETNFAY-IYIEDRLDENVQFARNDYDKDDNNDEQQDSC 99
           VV+ FT+D+  N  + +     +DENV++ + D D D +     +SC
Sbjct: 86  VVYIFTADEPENSDHSVTSNPPMDENVKYMQQDGDDDKDIHGDDESC 132


>SB_55491| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 197

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 14/48 (29%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
 Frame = -1

Query: 146 NDYDKDDNNDEQQDSCK*KII*SNYAQIAPVCRTTR--GNVHDRKFHC 9
           +D D DDNN + +D+     +  +  ++AP+   T+  G ++DR   C
Sbjct: 102 DDDDDDDNNHDDRDTTLSSCLNDSPVKLAPLPTNTQLPGQIYDRDEQC 149


>SB_37260| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 818

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 13/37 (35%), Positives = 23/37 (62%)
 Frame = -1

Query: 212 KETNFAYIYIEDRLDENVQFARNDYDKDDNNDEQQDS 102
           ++TN +Y    DR+DE ++   +D   DD++D+  DS
Sbjct: 326 EKTNMSYNN-HDRVDEGIEDDDSDDSDDDDSDDDDDS 361


>SB_3575| Best HMM Match : DUF943 (HMM E-Value=4.5)
          Length = 612

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = +2

Query: 98  YKSPVVRHYYHPCHNH 145
           Y  P  RHYYH C+ H
Sbjct: 45  YHYPCYRHYYHRCYRH 60


>SB_8119| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 195

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 14/47 (29%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
 Frame = -1

Query: 236 VVFEFTSDKETNFAY-IYIEDRLDENVQFARNDYDKDDNNDEQQDSC 99
           VV+ FT+D+  N  + +     +DENV++ + + D D +     +SC
Sbjct: 51  VVYIFTADESENSDHSVTSNPPMDENVKYMQQNGDDDKDIHGDDESC 97


>SB_42885| Best HMM Match : DUF983 (HMM E-Value=9.7)
          Length = 152

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = -1

Query: 188 YIEDRLDENVQFARNDYDKDDNNDEQQD 105
           Y  D  D+N  F  N  + DDNND++ D
Sbjct: 9   YDADDDDDNTSFYNNYDNDDDNNDDKND 36


>SB_6447| Best HMM Match : DUF164 (HMM E-Value=0.48)
          Length = 598

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = -1

Query: 203 NFAYIYIEDRLDENVQFARNDYDKDDNNDEQQD 105
           NF   Y+    D++     +DYD DD++D++ D
Sbjct: 194 NFTSYYMNGHDDDSGDDDDDDYDDDDDDDDEDD 226


>SB_37031| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 100

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 13/46 (28%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
 Frame = -1

Query: 236 VVFEFTSD-KETNFAYIYIEDRLDENVQFARNDYDKDDNNDEQQDS 102
           VV++   D  + + A++ ++D  D++     +D D DD+ND+  D+
Sbjct: 36  VVYDDVGDIADDDNAFVVLDDDDDDDDDDDDDDDDNDDDNDDDDDN 81


>SB_31687| Best HMM Match : DUF420 (HMM E-Value=6.3)
          Length = 349

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 28/110 (25%), Positives = 49/110 (44%), Gaps = 1/110 (0%)
 Frame = +3

Query: 210 FVRGKLENYWTDQRETATIRRGINRRWL*AIYFSNSLSPSPCFLNLFVYCSFDAPSPQNY 389
           FV+ +  ++ ++ RET T R GI   +  A+   +  S   C+ +   +    AP  +  
Sbjct: 23  FVKLQPTHFVSETRETTTTRTGIRAFYRHAVSMPHFSSILACYADSNNHVH--APKIKGG 80

Query: 390 *TYRDRTNTFQRSI-FRRQVFFGFHRSSLIFFRFTLLYIFHFNLHLYIYI 536
               D +  +  ++ FR  V F   R S+  F F     + F+L LY+ I
Sbjct: 81  KKDADVSCAYYSAVVFRACVIFRLIRGSVQRFEFVNFTHWIFSLFLYLII 130


>SB_28087| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1501

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = +1

Query: 238 GPISVKPQPFDAELIVDGYRLY 303
           G +SV P   DAE+ VDG R+Y
Sbjct: 367 GRVSVTPSNGDAEVFVDGKRVY 388


>SB_57572| Best HMM Match : RVT_1 (HMM E-Value=1.5e-16)
          Length = 603

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
 Frame = -1

Query: 206 TNFAYIYIE--DRLDENVQFARNDYDKDDNNDEQQD 105
           TN  Y Y+E  D  D N     ND D DD++D+  D
Sbjct: 7   TNRRYAYVESCDVDDNNDDDDDNDDDNDDDDDDDDD 42


>SB_53568| Best HMM Match : Chromadorea_ALT (HMM E-Value=0.61)
          Length = 375

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 7/16 (43%), Positives = 13/16 (81%)
 Frame = -1

Query: 374 WRVKRTINKQIEKTWR 327
           W+VK+ + K++EK W+
Sbjct: 357 WKVKQAVKKRVEKAWK 372


>SB_26060| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2671

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 10/29 (34%), Positives = 20/29 (68%)
 Frame = -1

Query: 191  IYIEDRLDENVQFARNDYDKDDNNDEQQD 105
            + +ED +++N+ +  ND D DD++D+  D
Sbjct: 927  VIVEDDVEDNIVY--NDDDDDDDDDDHDD 953


>SB_2840| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2248

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = -1

Query: 173 LDENVQFARNDYDKDDNNDEQQD 105
           LD N +    DYD DD +D++++
Sbjct: 896 LDSNEEDGEEDYDDDDEDDDEEE 918


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,666,821
Number of Sequences: 59808
Number of extensions: 321538
Number of successful extensions: 1641
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1137
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1535
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1385833362
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)