Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0002_F01
(578 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY352277-2|AAQ67419.1| 88|Apis mellifera EX4.8-5.8 protein. 25 0.71
DQ667182-1|ABG75734.1| 445|Apis mellifera GABA-gated chloride c... 23 2.9
DQ288391-1|ABC41341.1| 630|Apis mellifera vasa protein protein. 23 2.9
DQ667181-1|ABG75733.1| 445|Apis mellifera GABA-gated chloride c... 22 3.8
AY739658-1|AAU85297.1| 664|Apis mellifera hyperpolarization-act... 22 3.8
AY280848-1|AAQ16312.1| 632|Apis mellifera hyperpolarization-act... 22 3.8
AF094822-1|AAC63381.1| 365|Apis mellifera GABA receptor Rdl sub... 22 3.8
DQ325081-1|ABD14095.1| 186|Apis mellifera complementary sex det... 22 5.0
U26026-1|AAA69069.1| 377|Apis mellifera long-wavelength rhodops... 21 6.7
DQ325080-1|ABD14094.1| 184|Apis mellifera complementary sex det... 21 6.7
DQ325079-1|ABD14093.1| 184|Apis mellifera complementary sex det... 21 6.7
DQ325078-1|ABD14092.1| 184|Apis mellifera complementary sex det... 21 6.7
AB178034-1|BAD27112.1| 76|Apis mellifera apiceropsin protein. 21 6.7
DQ435333-1|ABD92648.1| 135|Apis mellifera OBP16 protein. 21 8.8
AY395073-1|AAQ96729.1| 203|Apis mellifera GABA neurotransmitter... 21 8.8
>AY352277-2|AAQ67419.1| 88|Apis mellifera EX4.8-5.8 protein.
Length = 88
Score = 24.6 bits (51), Expect = 0.71
Identities = 10/15 (66%), Positives = 10/15 (66%)
Frame = +3
Query: 195 SKVCFFVRGKLENYW 239
SKVC VR KLE W
Sbjct: 54 SKVCIVVRRKLEENW 68
>DQ667182-1|ABG75734.1| 445|Apis mellifera GABA-gated chloride
channel protein.
Length = 445
Score = 22.6 bits (46), Expect = 2.9
Identities = 14/61 (22%), Positives = 26/61 (42%)
Frame = +3
Query: 162 VFI*SIFYIYVSKVCFFVRGKLENYWTDQRETATIRRGINRRWL*AIYFSNSLSPSPCFL 341
+++ SI + K+ F + +WTD R R G+ + + + N P F+
Sbjct: 42 MYVLSISSLSEVKMDFTLDFYFRQFWTDPRLAFKKRTGVETLSVGSEFIKNIWVPDTFFV 101
Query: 342 N 344
N
Sbjct: 102 N 102
Score = 22.2 bits (45), Expect = 3.8
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = -3
Query: 393 FSSFEAMARQKNNKQTN*ENMAKGSENLKNI 301
F F R K+T E ++ GSE +KNI
Sbjct: 63 FRQFWTDPRLAFKKRTGVETLSVGSEFIKNI 93
Score = 21.4 bits (43), Expect = 6.7
Identities = 8/15 (53%), Positives = 11/15 (73%)
Frame = +2
Query: 494 FVHFPLQFTLIYLHL 538
FV F L + +IYLH+
Sbjct: 416 FVCFNLMYWIIYLHI 430
>DQ288391-1|ABC41341.1| 630|Apis mellifera vasa protein protein.
Length = 630
Score = 22.6 bits (46), Expect = 2.9
Identities = 7/21 (33%), Positives = 13/21 (61%)
Frame = -1
Query: 170 DENVQFARNDYDKDDNNDEQQ 108
D+N + NDY DN ++++
Sbjct: 111 DDNNDYEDNDYGNQDNRNDRR 131
>DQ667181-1|ABG75733.1| 445|Apis mellifera GABA-gated chloride
channel protein.
Length = 445
Score = 22.2 bits (45), Expect = 3.8
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = -3
Query: 393 FSSFEAMARQKNNKQTN*ENMAKGSENLKNI 301
F F R K+T E ++ GSE +KNI
Sbjct: 63 FRQFWTDPRLAFKKRTGVETLSVGSEFIKNI 93
Score = 21.4 bits (43), Expect = 6.7
Identities = 8/15 (53%), Positives = 11/15 (73%)
Frame = +2
Query: 494 FVHFPLQFTLIYLHL 538
FV F L + +IYLH+
Sbjct: 416 FVCFNLMYWIIYLHI 430
Score = 21.0 bits (42), Expect = 8.8
Identities = 10/37 (27%), Positives = 16/37 (43%)
Frame = +3
Query: 234 YWTDQRETATIRRGINRRWL*AIYFSNSLSPSPCFLN 344
+WTD R R G+ + + + N P F+N
Sbjct: 66 FWTDPRLAFKKRTGVETLSVGSEFIKNIWVPDTFFVN 102
>AY739658-1|AAU85297.1| 664|Apis mellifera
hyperpolarization-activated ion channelvariant L
protein.
Length = 664
Score = 22.2 bits (45), Expect = 3.8
Identities = 10/26 (38%), Positives = 18/26 (69%)
Frame = -2
Query: 340 RKHGEGLREFEKYIAYNHLRLIPRRM 263
R++ E +++ E+Y+AY R +PR M
Sbjct: 386 RQYREKVKQVEEYMAY---RKLPREM 408
>AY280848-1|AAQ16312.1| 632|Apis mellifera
hyperpolarization-activated ion channel protein.
Length = 632
Score = 22.2 bits (45), Expect = 3.8
Identities = 10/26 (38%), Positives = 18/26 (69%)
Frame = -2
Query: 340 RKHGEGLREFEKYIAYNHLRLIPRRM 263
R++ E +++ E+Y+AY R +PR M
Sbjct: 354 RQYREKVKQVEEYMAY---RKLPREM 376
>AF094822-1|AAC63381.1| 365|Apis mellifera GABA receptor Rdl
subunit protein.
Length = 365
Score = 22.2 bits (45), Expect = 3.8
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = -3
Query: 393 FSSFEAMARQKNNKQTN*ENMAKGSENLKNI 301
F F R K+T E ++ GSE +KNI
Sbjct: 2 FRQFWTDPRLAFKKRTGVETLSVGSEFIKNI 32
Score = 21.0 bits (42), Expect = 8.8
Identities = 10/37 (27%), Positives = 16/37 (43%)
Frame = +3
Query: 234 YWTDQRETATIRRGINRRWL*AIYFSNSLSPSPCFLN 344
+WTD R R G+ + + + N P F+N
Sbjct: 5 FWTDPRLAFKKRTGVETLSVGSEFIKNIWVPDTFFVN 41
>DQ325081-1|ABD14095.1| 186|Apis mellifera complementary sex
determiner protein.
Length = 186
Score = 21.8 bits (44), Expect = 5.0
Identities = 10/31 (32%), Positives = 16/31 (51%)
Frame = -1
Query: 146 NDYDKDDNNDEQQDSCK*KII*SNYAQIAPV 54
N+Y + NN+ ++CK NY + PV
Sbjct: 94 NNYKYNYNNNNYNNNCKKLYYNINYIEQIPV 124
>U26026-1|AAA69069.1| 377|Apis mellifera long-wavelength rhodopsin
protein.
Length = 377
Score = 21.4 bits (43), Expect = 6.7
Identities = 8/24 (33%), Positives = 13/24 (54%)
Frame = +2
Query: 452 WIPPILSNFFSIYSFVHFPLQFTL 523
W P ++ NF I++ V FT+
Sbjct: 291 WTPYLVINFSGIFNLVKISPLFTI 314
>DQ325080-1|ABD14094.1| 184|Apis mellifera complementary sex
determiner protein.
Length = 184
Score = 21.4 bits (43), Expect = 6.7
Identities = 9/31 (29%), Positives = 16/31 (51%)
Frame = -1
Query: 146 NDYDKDDNNDEQQDSCK*KII*SNYAQIAPV 54
N+Y + NN+ ++CK NY + P+
Sbjct: 94 NNYKYNYNNNNYNNNCKKLYYNINYIEQIPI 124
>DQ325079-1|ABD14093.1| 184|Apis mellifera complementary sex
determiner protein.
Length = 184
Score = 21.4 bits (43), Expect = 6.7
Identities = 9/31 (29%), Positives = 16/31 (51%)
Frame = -1
Query: 146 NDYDKDDNNDEQQDSCK*KII*SNYAQIAPV 54
N+Y + NN+ ++CK NY + P+
Sbjct: 94 NNYKYNYNNNNYNNNCKKLYYNINYIEQIPI 124
>DQ325078-1|ABD14092.1| 184|Apis mellifera complementary sex
determiner protein.
Length = 184
Score = 21.4 bits (43), Expect = 6.7
Identities = 9/31 (29%), Positives = 16/31 (51%)
Frame = -1
Query: 146 NDYDKDDNNDEQQDSCK*KII*SNYAQIAPV 54
N+Y + NN+ ++CK NY + P+
Sbjct: 94 NNYKYNYNNNNYNNNCKKLYYNINYIEQIPI 124
>AB178034-1|BAD27112.1| 76|Apis mellifera apiceropsin protein.
Length = 76
Score = 21.4 bits (43), Expect = 6.7
Identities = 8/24 (33%), Positives = 13/24 (54%)
Frame = +2
Query: 452 WIPPILSNFFSIYSFVHFPLQFTL 523
W P ++ NF I++ V FT+
Sbjct: 41 WTPYLVINFSGIFNLVKISPLFTI 64
>DQ435333-1|ABD92648.1| 135|Apis mellifera OBP16 protein.
Length = 135
Score = 21.0 bits (42), Expect = 8.8
Identities = 7/18 (38%), Positives = 12/18 (66%)
Frame = +1
Query: 334 VFSICLFIVLLTRHRLKT 387
+F+IC+ + +T LKT
Sbjct: 7 IFAICVCVGAMTHEELKT 24
>AY395073-1|AAQ96729.1| 203|Apis mellifera GABA neurotransmitter
transporter-1A protein.
Length = 203
Score = 21.0 bits (42), Expect = 8.8
Identities = 8/22 (36%), Positives = 11/22 (50%)
Frame = +3
Query: 174 SIFYIYVSKVCFFVRGKLENYW 239
+IFY ++S G NYW
Sbjct: 84 AIFYFFMSMRSELPWGSCNNYW 105
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 159,796
Number of Sequences: 438
Number of extensions: 3108
Number of successful extensions: 22
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16748661
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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