Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_F01
         (578 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g08600.1 68418.m01023 U3 ribonucleoprotein (Utp) family prote...    29   1.7  
At3g43230.1 68416.m04563 zinc finger (FYVE type) family protein ...    29   2.2  
At3g44110.1 68416.m04727 DNAJ heat shock protein, putative (J3) ...    29   3.0  
At2g03730.1 68415.m00333 ACT domain-containing protein (ACR5) co...    28   3.9  
At4g08410.1 68417.m01390 proline-rich extensin-like family prote...    27   6.8  
At4g08400.1 68417.m01388 proline-rich extensin-like family prote...    27   6.8  
At5g56200.1 68418.m07012 zinc finger (C2H2 type) family protein ...    27   9.0  
At3g01260.1 68416.m00032 aldose 1-epimerase family protein simil...    27   9.0  

>At5g08600.1 68418.m01023 U3 ribonucleoprotein (Utp) family protein
           contains Pfam profile: PF04615 Utp14 protein
          Length = 822

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 12/35 (34%), Positives = 22/35 (62%)
 Frame = -1

Query: 215 DKETNFAYIYIEDRLDENVQFARNDYDKDDNNDEQ 111
           ++  N+ +   ED  DENV+   +D D DD++D++
Sbjct: 76  ERVVNYEFELAEDCEDENVESEDDDDDDDDDDDDR 110


>At3g43230.1 68416.m04563 zinc finger (FYVE type) family protein
           contains Pfam domain PF01363: FYVE zinc finger
          Length = 485

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 10/23 (43%), Positives = 17/23 (73%)
 Frame = -1

Query: 170 DENVQFARNDYDKDDNNDEQQDS 102
           +EN++F  +DYD DD++D+   S
Sbjct: 13  EENIKFKYDDYDDDDDDDDGSGS 35


>At3g44110.1 68416.m04727 DNAJ heat shock protein, putative (J3)
           identical to AtJ3 [Arabidopsis thaliana] GI:2641638,
           strong similarity to several plant DnaJ proteins from
           PGR; contains Pfam profiles PF00226 DnaJ domain, PF00684
           DnaJ central domain (4 repeats), PF01556 DnaJ C terminal
           region
          Length = 420

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 13/38 (34%), Positives = 18/38 (47%)
 Frame = -1

Query: 227 EFTSDKETNFAYIYIEDRLDENVQFARNDYDKDDNNDE 114
           E    +ET    + IED +    Q  R  YD DD +D+
Sbjct: 370 EIDECEETTLHDVNIEDEMRRKAQAQREAYDDDDEDDD 407


>At2g03730.1 68415.m00333 ACT domain-containing protein (ACR5)
           contains Pfam ACT domain PF01842
          Length = 456

 Score = 28.3 bits (60), Expect = 3.9
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = -1

Query: 179 DRLDENVQFARNDYDKDDNNDEQQDSC 99
           DR    + FA  DYD+ +NN + +D C
Sbjct: 226 DRKLHQLMFADRDYDEWENNVDDEDKC 252


>At4g08410.1 68417.m01390 proline-rich extensin-like family protein
           contains proline-rich extensin domains,
           INTERPRO:IPR002965;
          Length = 707

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = +2

Query: 62  LSARSLII*SFIYKSPVVRHYYHPCHNH 145
           LSA +  + S+ Y SP   HY  P H H
Sbjct: 40  LSAIAATVTSYPYTSPQTPHYNSPSHEH 67


>At4g08400.1 68417.m01388 proline-rich extensin-like family protein
           contains proline-rich extensin domains,
           INTERPRO:IPR002965
          Length = 513

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = +2

Query: 62  LSARSLII*SFIYKSPVVRHYYHPCHNH 145
           LSA +  + S+ Y SP   HY  P H H
Sbjct: 22  LSAIAATVTSYPYTSPQTPHYNSPSHEH 49


>At5g56200.1 68418.m07012 zinc finger (C2H2 type) family protein
           contains Pfam domain, PF00096: Zinc finger, C2H2 type
          Length = 493

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = -1

Query: 173 LDENVQFARNDYDKDDNNDEQQD 105
           LD + +F  +DYD DD+ D+  D
Sbjct: 179 LDHDDEFISSDYDDDDDFDDDDD 201


>At3g01260.1 68416.m00032 aldose 1-epimerase family protein similar
           to non-cell-autonomous protein pathway2, plasmodesmal
           receptor [Nicotiana tabacum] GI:15824567; contains Pfam
           profile PF01263: Aldose 1-epimerase
          Length = 378

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = -1

Query: 146 NDYDKDDNNDEQQD 105
           ND+D DDNND+  D
Sbjct: 68  NDHDDDDNNDDNND 81


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,724,721
Number of Sequences: 28952
Number of extensions: 230971
Number of successful extensions: 667
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 637
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 665
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1131744440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)