Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_E24
         (577 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC17D1.01 ||SPBC17D11.09|sequence orphan|Schizosaccharomyces p...    31   0.091
SPBPB8B6.04c |grt1|SPAPB8B6.04c, SPAPB8B6.04c|transcription fact...    27   2.6  
SPAC12G12.01c ||SPAC630.02|ubiquitin-protein ligase E3|Schizosac...    27   2.6  
SPAC5H10.13c |gmh2||alpha-1,2-galactosyltransferase Gmh2 |Schizo...    25   6.0  
SPBC16D10.02 |trm11||tRNA |Schizosaccharomyces pombe|chr 2|||Manual    25   6.0  
SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase Snf22...    25   7.9  
SPBC2A9.10 |||Bin3 family|Schizosaccharomyces pombe|chr 2|||Manual     25   7.9  
SPBC31F10.10c |||zf-MYND type zinc finger protein|Schizosaccharo...    25   7.9  

>SPBC17D1.01 ||SPBC17D11.09|sequence orphan|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 584

 Score = 31.5 bits (68), Expect = 0.091
 Identities = 21/54 (38%), Positives = 25/54 (46%), Gaps = 4/54 (7%)
 Frame = +2

Query: 107 SPNFEGFT-PFNQYLTHQDPNKVTFQEQFL---DISKLPVVMGDLTSGPVPNNS 256
           SP F  F  P + Y   Q PN  T    F    D+S  P+V  +L S P P NS
Sbjct: 499 SPQFPPFELPPHNYSQAQSPNLATPSPSFSSLPDVSLPPIVKPNLMSEPTPTNS 552


>SPBPB8B6.04c |grt1|SPAPB8B6.04c, SPAPB8B6.04c|transcription factor
           Grt1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 648

 Score = 26.6 bits (56), Expect = 2.6
 Identities = 18/64 (28%), Positives = 31/64 (48%), Gaps = 3/64 (4%)
 Frame = +2

Query: 251 NSWLATKPIEVTNTHNTNYNKMYTHNTLPFIDQDDSFDTKFV---SVTPREVESNDIIIS 421
           N+ L +K  +  + +NT ++K+  H  +     DDS D KF    S TP +   +D    
Sbjct: 569 NNILVSKKYQDNSVNNTYFDKVMQHVLVHSPAFDDSSDPKFETNRSETPTQYTLDDSAND 628

Query: 422 EYIV 433
           E ++
Sbjct: 629 ELMI 632


>SPAC12G12.01c ||SPAC630.02|ubiquitin-protein ligase
           E3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 905

 Score = 26.6 bits (56), Expect = 2.6
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +2

Query: 50  DVNSSYQTGFYNTTPVDPLSPNF 118
           D  SS  T +Y+   VDP SPN+
Sbjct: 172 DSVSSVNTQYYSNIVVDPFSPNY 194


>SPAC5H10.13c |gmh2||alpha-1,2-galactosyltransferase Gmh2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 346

 Score = 25.4 bits (53), Expect = 6.0
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = +2

Query: 200 SKLPVVMGDLTSGPVPNNSWLATKPIEVTNTH 295
           SK+P V+  +   P     WL  +   +TNTH
Sbjct: 153 SKMPAVLQTMKKYPKAEWIWLLDQDAIITNTH 184


>SPBC16D10.02 |trm11||tRNA |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 452

 Score = 25.4 bits (53), Expect = 6.0
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = +2

Query: 23  LSPQGWDAFDVNSSYQTGF 79
           L+P  WD+F  NSSY+  F
Sbjct: 121 LNPAPWDSFKHNSSYKFTF 139


>SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase
           Snf22|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1680

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 20/83 (24%), Positives = 31/83 (37%), Gaps = 4/83 (4%)
 Frame = +2

Query: 14  HTPL-SPQGWDAFDVNSSYQTGFYNTTPV---DPLSPNFEGFTPFNQYLTHQDPNKVTFQ 181
           H P   P   DA +  + +Q+   +  P    + L P+   F P +      DPN V   
Sbjct: 339 HFPYPQPSNLDAINAKTYFQSSSNSPAPYVYRNNLPPSATSFQPSSSRSPSVDPNTVKSA 398

Query: 182 EQFLDISKLPVVMGDLTSGPVPN 250
           +    +S  P      T   VP+
Sbjct: 399 QHIPRMSPSPSASALKTQSHVPS 421


>SPBC2A9.10 |||Bin3 family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 268

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = +2

Query: 23  LSPQGWDAFDVNSSYQTGFYNTTP 94
           L PQGWD++ + ++ +   +N TP
Sbjct: 187 LEPQGWDSY-LKAAKKISVFNQTP 209


>SPBC31F10.10c |||zf-MYND type zinc finger
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 574

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 10/33 (30%), Positives = 18/33 (54%)
 Frame = -2

Query: 564 STSGVLIESVGQAGGRAPTSTDKPELRLSTPNS 466
           + S + I+ +  A    PTST+     ++TP+S
Sbjct: 256 ANSPLTIQRISSAAPSTPTSTENVNYNMTTPSS 288


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,359,189
Number of Sequences: 5004
Number of extensions: 47741
Number of successful extensions: 137
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 133
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 137
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 246098644
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)