Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_E24
         (577 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_01_0019 - 129767-129931,130078-130257,130491-130728,130833-13...    32   0.38 
12_02_0585 + 20824752-20825954,20826141-20826329,20826533-208266...    30   1.5  
10_08_0745 - 20260136-20260236,20260890-20260937,20261025-202611...    29   3.5  
08_02_0418 + 16908077-16908156,16908307-16908595,16908686-16908955     28   6.1  

>05_01_0019 -
           129767-129931,130078-130257,130491-130728,130833-131236,
           131284-131427,131709-131995,132071-132150,132563-132714,
           132793-132909,133292-133450,133546-133946,134106-134423,
           135050-135095,135203-135310
          Length = 932

 Score = 31.9 bits (69), Expect = 0.38
 Identities = 16/47 (34%), Positives = 25/47 (53%)
 Frame = +2

Query: 323 HNTLPFIDQDDSFDTKFVSVTPREVESNDIIISEYIVHNDQTSKGDL 463
           HN    ++Q     T+ +S T  ++ S+ I I   + HN+Q S GDL
Sbjct: 474 HNLFSPVNQQLESPTQCISTTGPQILSSPIRIKSTLQHNNQASVGDL 520


>12_02_0585 +
           20824752-20825954,20826141-20826329,20826533-20826690,
           20826913-20827009,20827368-20827730,20829225-20829303,
           20830180-20830286
          Length = 731

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 26/79 (32%), Positives = 37/79 (46%), Gaps = 3/79 (3%)
 Frame = +2

Query: 62  SYQTGFYNTTPVDPLSPNFEGFTPFNQYLTHQDPNKVTFQEQF-LDISKLPV-VMGDLTS 235
           SYQ G  N+TP D +S         N  L +QD  + T + +  L I++  +   GDL S
Sbjct: 486 SYQRGIANSTPTDSIS---------NWMLKYQDQEQQTKERKLSLQITQSEIRSYGDLNS 536

Query: 236 GPVPNNS-WLATKPIEVTN 289
           GP       + TK  + TN
Sbjct: 537 GPWDTTQVTITTKAGDCTN 555


>10_08_0745 -
           20260136-20260236,20260890-20260937,20261025-20261165,
           20261358-20261603,20261744-20262583,20263253-20263286
          Length = 469

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = +2

Query: 80  YNTTPVDPLSPNFEGFTPFNQYLT 151
           +N  PV+PLSP +  +T ++  LT
Sbjct: 66  HNANPVEPLSPMYPNYTSYDPVLT 89


>08_02_0418 + 16908077-16908156,16908307-16908595,16908686-16908955
          Length = 212

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 25/75 (33%), Positives = 34/75 (45%), Gaps = 3/75 (4%)
 Frame = +2

Query: 98  DPLSPNFEG---FTPFNQYLTHQDPNKVTFQEQFLDISKLPVVMGDLTSGPVPNNSWLAT 268
           DP+SP  +    F   +Q LT Q PN +    Q  D S   V   +L  GP+P+N ++ T
Sbjct: 118 DPISPEAQSQPHFPTHDQLLT-QIPNAMV--SQMFDESS-QVSQMNLAPGPLPDNQFVMT 173

Query: 269 KPIEVTNTHNTNYNK 313
               V  T  T   K
Sbjct: 174 NTPTVRPTLLTTATK 188


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,818,919
Number of Sequences: 37544
Number of extensions: 277865
Number of successful extensions: 693
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 680
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 693
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1340735508
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)