Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_E24
         (577 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z83123-10|CAB05609.2|  988|Caenorhabditis elegans Hypothetical p...    31   0.78 
AY095296-1|AAM26298.1|  988|Caenorhabditis elegans RecQ helicase...    31   0.78 
Z75532-2|CAA99812.1|  839|Caenorhabditis elegans Hypothetical pr...    29   2.4  
U58735-3|AAC48143.1|  337|Caenorhabditis elegans Hypothetical pr...    28   4.1  
AC024869-5|AAK68606.3| 1126|Caenorhabditis elegans Hypothetical ...    28   4.1  
U41996-3|AAA83472.2|  362|Caenorhabditis elegans More of ms prot...    28   5.5  
U28731-2|AAA68297.1|  658|Caenorhabditis elegans Hypothetical pr...    28   5.5  
AF013952-1|AAC47749.1|  362|Caenorhabditis elegans mom-2 protein.      28   5.5  
AF003133-3|AAB54138.2| 2192|Caenorhabditis elegans Low-density l...    28   5.5  
U23452-11|AAK31548.1|  334|Caenorhabditis elegans Hypothetical p...    27   7.2  
Z81098-2|CAB03182.1|  961|Caenorhabditis elegans Hypothetical pr...    27   9.5  
AF014939-4|AAB63932.1| 1277|Caenorhabditis elegans Hypothetical ...    27   9.5  

>Z83123-10|CAB05609.2|  988|Caenorhabditis elegans Hypothetical
           protein T04A11.6 protein.
          Length = 988

 Score = 30.7 bits (66), Expect = 0.78
 Identities = 15/30 (50%), Positives = 16/30 (53%)
 Frame = +2

Query: 335 PFIDQDDSFDTKFVSVTPREVESNDIIISE 424
           P +D DDSFD   V  T  EV S DI   E
Sbjct: 132 PIVDLDDSFDNFHVGSTSEEVVSGDIAPEE 161


>AY095296-1|AAM26298.1|  988|Caenorhabditis elegans RecQ helicase
           protein.
          Length = 988

 Score = 30.7 bits (66), Expect = 0.78
 Identities = 15/30 (50%), Positives = 16/30 (53%)
 Frame = +2

Query: 335 PFIDQDDSFDTKFVSVTPREVESNDIIISE 424
           P +D DDSFD   V  T  EV S DI   E
Sbjct: 132 PIVDLDDSFDNFHVGSTSEEVVSGDIAPEE 161


>Z75532-2|CAA99812.1|  839|Caenorhabditis elegans Hypothetical
           protein C54G10.2 protein.
          Length = 839

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 16/44 (36%), Positives = 25/44 (56%)
 Frame = +2

Query: 263 ATKPIEVTNTHNTNYNKMYTHNTLPFIDQDDSFDTKFVSVTPRE 394
           A KP+E++ +   N  K    +   F+D DDSFDT F  +T ++
Sbjct: 158 AKKPVEISPSTKEN-TKTKKVSDDEFVDSDDSFDT-FTPITVKK 199


>U58735-3|AAC48143.1|  337|Caenorhabditis elegans Hypothetical
           protein F20B4.2 protein.
          Length = 337

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 16/63 (25%), Positives = 29/63 (46%), Gaps = 4/63 (6%)
 Frame = +2

Query: 146 LTHQDPNKVTFQEQFLDISKLPVVMGDLTSGPVPNNSWLATKPIE---VTNTHNTNY-NK 313
           + HQ   ++ F    L+ISK+   M  +     P  SW  +  ++   +   H TN+ N+
Sbjct: 68  IDHQPKREIAFTHSLLNISKIVNRMIPIRCSMFPGKSWKDSNNLKRPSIAKVHRTNHANE 127

Query: 314 MYT 322
           + T
Sbjct: 128 LRT 130


>AC024869-5|AAK68606.3| 1126|Caenorhabditis elegans Hypothetical
           protein Y75B7AL.4a protein.
          Length = 1126

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 21/59 (35%), Positives = 31/59 (52%), Gaps = 4/59 (6%)
 Frame = +2

Query: 128 TPFN--QYLTHQDPNKVTFQEQFLDISKLPVVMGDLTSGPVPN-NSWLATKP-IEVTNT 292
           TP N  + +  +D N V   +QF D++  P+VM   T     N ++W+ TK  I VT T
Sbjct: 682 TPKNTPKVVLRKDLNDVKRMKQFCDMATSPMVMDTPTKLSHENGHAWVGTKQVISVTRT 740


>U41996-3|AAA83472.2|  362|Caenorhabditis elegans More of ms protein
           2 protein.
          Length = 362

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 14/51 (27%), Positives = 25/51 (49%)
 Frame = +2

Query: 26  SPQGWDAFDVNSSYQTGFYNTTPVDPLSPNFEGFTPFNQYLTHQDPNKVTF 178
           +P+  DA+ + S   T   N+     L  N  G TP  + + H++PN + +
Sbjct: 18  APKSADAWWLLSKTDTSSANSGSSPILCKNVPGLTPQQKRMCHENPNIIKY 68


>U28731-2|AAA68297.1|  658|Caenorhabditis elegans Hypothetical
           protein F12A10.4 protein.
          Length = 658

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
 Frame = +2

Query: 239 PVPNNSWLATKPIEVTNTHN--TNYNKMYTHNTLPFIDQDDSFDTKFVSVTP 388
           P+ NNSW  TKP +  +T N  T Y+  +    L  I   +  D  FV + P
Sbjct: 167 PLLNNSW--TKPSDPISTSNSSTTYSYPFLTKILAHIILHNPDDAGFVGIKP 216


>AF013952-1|AAC47749.1|  362|Caenorhabditis elegans mom-2 protein.
          Length = 362

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 14/51 (27%), Positives = 25/51 (49%)
 Frame = +2

Query: 26  SPQGWDAFDVNSSYQTGFYNTTPVDPLSPNFEGFTPFNQYLTHQDPNKVTF 178
           +P+  DA+ + S   T   N+     L  N  G TP  + + H++PN + +
Sbjct: 18  APKSADAWWLLSKTDTSSANSGSSPILCKNVPGLTPQQKRMCHENPNIIKY 68


>AF003133-3|AAB54138.2| 2192|Caenorhabditis elegans Low-density
           lipoprotein receptorrelated protein 2 protein.
          Length = 2192

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = -1

Query: 568 TKYLWCAD*VCRPGWWSCSN 509
           TKY  C+  VCRPG+++C N
Sbjct: 7   TKY--CSTRVCRPGYFNCGN 24


>U23452-11|AAK31548.1|  334|Caenorhabditis elegans Hypothetical
           protein R07G3.8 protein.
          Length = 334

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 12/34 (35%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
 Frame = +2

Query: 173 TFQEQFLDISKL-PVVMGDLTSGPVPNNSWLATK 271
           ++ E    I K+ P+++ +L+SGP+P    LA K
Sbjct: 106 SYYEHVAKIEKIVPIILWELSSGPLPLEEQLANK 139


>Z81098-2|CAB03182.1|  961|Caenorhabditis elegans Hypothetical
           protein K07A12.2 protein.
          Length = 961

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 18/66 (27%), Positives = 31/66 (46%), Gaps = 1/66 (1%)
 Frame = +2

Query: 194 DISKLPV-VMGDLTSGPVPNNSWLATKPIEVTNTHNTNYNKMYTHNTLPFIDQDDSFDTK 370
           ++SK+P+ V+  +T G VP+   L    +E    H T+   M+   T   I  ++  +  
Sbjct: 758 NLSKIPMEVIAAVTRGEVPDMRLLPEDLLEHFKQHTTSLTSMFAGATAKNISIEEILEKL 817

Query: 371 FVSVTP 388
            V V P
Sbjct: 818 PVFVRP 823


>AF014939-4|AAB63932.1| 1277|Caenorhabditis elegans Hypothetical
           protein ZC132.5 protein.
          Length = 1277

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 12/36 (33%), Positives = 24/36 (66%)
 Frame = +2

Query: 374 VSVTPREVESNDIIISEYIVHNDQTSKGDLQELGVE 481
           +S+  RE +SND   ++ +   D+TS+ +++ LGV+
Sbjct: 376 LSMNIREFQSNDQSFTDLLDECDKTSESEVKVLGVK 411


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,957,550
Number of Sequences: 27780
Number of extensions: 258747
Number of successful extensions: 750
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 722
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 750
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1194789454
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)