Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_E24
         (577 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g47340.1 68418.m05835 palmitoyl protein thioesterase family p...    35   0.034
At5g47330.1 68418.m05834 palmitoyl protein thioesterase family p...    32   0.24 
At4g17470.1 68417.m02613 palmitoyl protein thioesterase family p...    31   0.55 
At3g58160.1 68416.m06485 myosin heavy chain, putative similar to...    29   1.7  
At1g27080.1 68414.m03301 proton-dependent oligopeptide transport...    29   1.7  
At5g23520.1 68418.m02760 expressed protein                             29   2.2  
At3g60340.2 68416.m06746 palmitoyl protein thioesterase family p...    29   2.2  
At3g60340.1 68416.m06745 palmitoyl protein thioesterase family p...    29   2.2  
At5g54350.1 68418.m06768 expressed protein  ; expression support...    28   3.9  
At5g40930.1 68418.m04969 mitochondrial import receptor subunit T...    28   3.9  
At3g23820.1 68416.m02994 NAD-dependent epimerase/dehydratase fam...    28   3.9  
At1g63210.1 68414.m07144 hypothetical protein contains Pfam prof...    28   5.1  
At3g42910.1 68416.m04500 expressed protein ; expression supporte...    27   6.8  

>At5g47340.1 68418.m05835 palmitoyl protein thioesterase family
           protein 
          Length = 317

 Score = 35.1 bits (77), Expect = 0.034
 Identities = 27/100 (27%), Positives = 46/100 (46%), Gaps = 4/100 (4%)
 Frame = +2

Query: 146 LTHQDPNK--VTFQEQFLDISKLPVVMGDLTSGPVPNNS-WLATKPI-EVTNTHNTNYNK 313
           L ++ PN+   T++++F  +  L +V         PN+S W    P  E     + N  K
Sbjct: 195 LNNEIPNQRNQTYKDRFTSLHNLVLVKFQDDEVITPNDSTWFGFYPDGEFETLLSANQTK 254

Query: 314 MYTHNTLPFIDQDDSFDTKFVSVTPREVESNDIIISEYIV 433
           +YT + +     DD+   KFVSV    V   +  + +Y+V
Sbjct: 255 LYTEDWIGLKTLDDAGKVKFVSVPGGHVRMAEEDVVKYVV 294


>At5g47330.1 68418.m05834 palmitoyl protein thioesterase family
           protein 
          Length = 314

 Score = 32.3 bits (70), Expect = 0.24
 Identities = 25/106 (23%), Positives = 45/106 (42%), Gaps = 3/106 (2%)
 Frame = +2

Query: 158 DPNKVTFQEQFLDISKLPVV--MGDLTSGPVPNNSWLATKPI-EVTNTHNTNYNKMYTHN 328
           D    T++++F  +  L ++   GD    P  ++SW    P  E     +    K+YT +
Sbjct: 198 DQRNQTYKDRFTSLHNLVLIKFQGDKVIVP-KDSSWFGFYPDGEFEPLLSAQQTKLYTED 256

Query: 329 TLPFIDQDDSFDTKFVSVTPREVESNDIIISEYIVHNDQTSKGDLQ 466
            +     DD+   KFVSV    +   D  + +++V   Q     +Q
Sbjct: 257 WIGLKTLDDAGKVKFVSVAGEHIRMVDEDVVKHVVPYLQDQPSSVQ 302


>At4g17470.1 68417.m02613 palmitoyl protein thioesterase family
           protein
          Length = 308

 Score = 31.1 bits (67), Expect = 0.55
 Identities = 21/91 (23%), Positives = 42/91 (46%), Gaps = 4/91 (4%)
 Frame = +2

Query: 173 TFQEQFLDISKLPVVMGDLTSGPVPNN-SWLATKPIEVTNTHNT---NYNKMYTHNTLPF 340
           TF+++F  +  L ++M    +  VP   SW    P   +++         K+YT + +  
Sbjct: 202 TFKDRFTSLQNLVLIMFQNDTILVPRETSWFGYYPDGASSSTPVLPPQKTKLYTEDWIGL 261

Query: 341 IDQDDSFDTKFVSVTPREVESNDIIISEYIV 433
              DD+   +F+SV    +E  +  + +Y+V
Sbjct: 262 KTLDDAGKVRFISVPGGHIEITEEDLVKYVV 292


>At3g58160.1 68416.m06485 myosin heavy chain, putative similar to
            myosin heavy chain [Arabidopsis thaliana]
            gi|602328|emb|CAA84067.
          Length = 1242

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 15/49 (30%), Positives = 27/49 (55%)
 Frame = +2

Query: 344  DQDDSFDTKFVSVTPREVESNDIIISEYIVHNDQTSKGDLQELGVERRS 490
            DQ D  +      T   +++ D I   ++VH+DQ+   D +E+G ER++
Sbjct: 997  DQSDDEEIGHKRKTKHSIQAEDGIEKSFVVHSDQS---DDEEIGHERKT 1042



 Score = 27.9 bits (59), Expect = 5.1
 Identities = 14/49 (28%), Positives = 28/49 (57%)
 Frame = +2

Query: 344  DQDDSFDTKFVSVTPREVESNDIIISEYIVHNDQTSKGDLQELGVERRS 490
            DQ D  + +    T   +++ D I   Y++H+DQ+   D +E+G +R++
Sbjct: 965  DQSDDEEIEHERKTKHCIQAEDGIEKSYVMHSDQS---DDEEIGHKRKT 1010


>At1g27080.1 68414.m03301 proton-dependent oligopeptide transport
           (POT) family protein similar to nitrate transporter
           NRT1-5 [Glycine max] GI:11933414; contains Pfam profile
           PF00854: POT family
          Length = 525

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
 Frame = +2

Query: 164 NKVTFQEQFLDISKLPVVM-GDLTSGPVPNNSW 259
           +K+   +QF  + K  V++ GDLTS  VP N W
Sbjct: 226 SKLPLTDQFKFLDKAAVILDGDLTSEGVPANKW 258


>At5g23520.1 68418.m02760 expressed protein 
          Length = 435

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 22/106 (20%), Positives = 41/106 (38%), Gaps = 7/106 (6%)
 Frame = +2

Query: 35  GWDAFDVNSSYQTGFYNTTPVDPLSPNF----EGFTPFNQYLTHQDPNKVTFQEQFLDIS 202
           GW AFD+    + G  +    DP  P        F    +   + +P++ +F    L  S
Sbjct: 10  GWTAFDLKQRQKQGLESEVEGDPFPPVSTSVNASFGVRGRLRRNHEPSEKSFSSVLLPPS 69

Query: 203 KLPVVMGDLTSGPVPNNSWLATKPIEVT---NTHNTNYNKMYTHNT 331
           + P +  +   G          KP  ++   N+H+  + K+   N+
Sbjct: 70  RFPALTENKDCGNQERGGCCRRKPDTLSLPVNSHDLAFTKLKEMNS 115


>At3g60340.2 68416.m06746 palmitoyl protein thioesterase family
           protein palmitoyl-protein thioesterase precursor, Mus
           musculus, EMBL:AF071025
          Length = 338

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 25/111 (22%), Positives = 50/111 (45%), Gaps = 4/111 (3%)
 Frame = +2

Query: 173 TFQEQFLDISKLPVVMGDLTSGPVPNN-SWLATKPIEVTNTH-NTNYNKMYTHNTLPFID 346
           T++E+F  +  L ++M +  +  +P   SW    P     T       K+YT + +    
Sbjct: 198 TYKERFSSLENLVLIMFEHDTILIPKETSWFGYYPDGSFKTILPPQETKLYTEDWIGLRT 257

Query: 347 QDDSFDTKFVSVTPREVESNDIIISEYIVHN--DQTSKGDLQELGVERRSS 493
            D++   KFV+V+   ++ +   + ++IV    D++S      + V   SS
Sbjct: 258 LDEAGKVKFVNVSGNHLQISHTDMKKHIVPYLCDKSSSSSSTTMAVSGSSS 308


>At3g60340.1 68416.m06745 palmitoyl protein thioesterase family
           protein palmitoyl-protein thioesterase precursor, Mus
           musculus, EMBL:AF071025
          Length = 338

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 25/111 (22%), Positives = 50/111 (45%), Gaps = 4/111 (3%)
 Frame = +2

Query: 173 TFQEQFLDISKLPVVMGDLTSGPVPNN-SWLATKPIEVTNTH-NTNYNKMYTHNTLPFID 346
           T++E+F  +  L ++M +  +  +P   SW    P     T       K+YT + +    
Sbjct: 198 TYKERFSSLENLVLIMFEHDTILIPKETSWFGYYPDGSFKTILPPQETKLYTEDWIGLRT 257

Query: 347 QDDSFDTKFVSVTPREVESNDIIISEYIVHN--DQTSKGDLQELGVERRSS 493
            D++   KFV+V+   ++ +   + ++IV    D++S      + V   SS
Sbjct: 258 LDEAGKVKFVNVSGNHLQISHTDMKKHIVPYLCDKSSSSSSTTMAVSGSSS 308


>At5g54350.1 68418.m06768 expressed protein  ; expression supported
           by MPSS
          Length = 279

 Score = 28.3 bits (60), Expect = 3.9
 Identities = 16/44 (36%), Positives = 25/44 (56%)
 Frame = +2

Query: 224 DLTSGPVPNNSWLATKPIEVTNTHNTNYNKMYTHNTLPFIDQDD 355
           DLT GP   +SW  T P   +NT  + Y K++T   LP + +++
Sbjct: 122 DLTLGP---SSWSNTNPSSWSNTDPSFYRKLFT-PVLPCVPRNN 161


>At5g40930.1 68418.m04969 mitochondrial import receptor subunit
           TOM20-4 / translocase of outer membrane 20 kDa subunit 4
           identical to mitochondrial import receptor subunit
           TOM20-4 SP:P82805 from [Arabidopsis thaliana]
          Length = 187

 Score = 28.3 bits (60), Expect = 3.9
 Identities = 17/67 (25%), Positives = 30/67 (44%)
 Frame = +2

Query: 56  NSSYQTGFYNTTPVDPLSPNFEGFTPFNQYLTHQDPNKVTFQEQFLDISKLPVVMGDLTS 235
           N+    GF ++   +  S NFE  + F Q    + P    +++     SK P +    T+
Sbjct: 81  NAHLSFGFLSSDQTEA-SDNFEKASQFFQLAVEEQPESELYRKSLTLASKAPELHTGGTA 139

Query: 236 GPVPNNS 256
           GP  N++
Sbjct: 140 GPSSNSA 146


>At3g23820.1 68416.m02994 NAD-dependent epimerase/dehydratase family
           protein similar to nucleotide sugar epimerase from
           Vibrio vulnificus GI:3093975 [PID:g3093975], WbnF
           [Escherichia coli] GI:5739472, CAPI protein
           {Staphylococcus aureus} SP|P39858; contains Pfam
           profile: PF01370 NAD dependent epimerase/dehydratase
           family
          Length = 460

 Score = 28.3 bits (60), Expect = 3.9
 Identities = 14/41 (34%), Positives = 23/41 (56%)
 Frame = +2

Query: 122 GFTPFNQYLTHQDPNKVTFQEQFLDISKLPVVMGDLTSGPV 244
           GF  FN Y    DP+    +++ L+  ++ +V GDL  GP+
Sbjct: 140 GFDNFNDYY---DPSLKRARQELLEKQQVFIVEGDLNDGPL 177


>At1g63210.1 68414.m07144 hypothetical protein contains Pfam
           profile: PF04283 protein of unknown function (DUF439)
          Length = 1197

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 15/61 (24%), Positives = 28/61 (45%)
 Frame = +2

Query: 314 MYTHNTLPFIDQDDSFDTKFVSVTPREVESNDIIISEYIVHNDQTSKGDLQELGVERRSS 493
           +Y H+T+   D+DD+ +     V         I++ EY+   +Q +K +   L +   S 
Sbjct: 802 VYAHDTVRG-DEDDAIEMAIEHVRDEPASLRKIVLDEYLRSKNQENKKETYSLIMRELSC 860

Query: 494 G 496
           G
Sbjct: 861 G 861


>At3g42910.1 68416.m04500 expressed protein ; expression supported
           by MPSS
          Length = 649

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = +2

Query: 323 HNTLPFIDQDDSFDTKF 373
           +N LP  D+DD FDT F
Sbjct: 191 NNPLPIFDEDDDFDTLF 207


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,134,913
Number of Sequences: 28952
Number of extensions: 237130
Number of successful extensions: 656
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 641
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 656
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1121903184
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)