Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_E21
         (444 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC337.12 |||human ZC3H3 homolog|Schizosaccharomyces pombe|chr ...    33   0.026
SPCC895.08c |||conserved fungal protein|Schizosaccharomyces pomb...    26   3.0  
SPBC2G5.02c |||CK2 family regulatory subunit |Schizosaccharomyce...    25   4.0  
SPCC1393.06c |||rRNA processing protein Ipi1|Schizosaccharomyces...    25   5.2  

>SPBC337.12 |||human ZC3H3 homolog|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 377

 Score = 32.7 bits (71), Expect = 0.026
 Identities = 15/37 (40%), Positives = 19/37 (51%), Gaps = 4/37 (10%)
 Frame = +3

Query: 309 CRDYIRGYCTRDNCRYIH----EIPPIAFLKDLFRFC 407
           CR ++ G C   NCRY+H    E  PI F    + FC
Sbjct: 264 CRYFLLGKCNNPNCRYVHIHYSENAPICFEFAKYGFC 300


>SPCC895.08c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 490

 Score = 25.8 bits (54), Expect = 3.0
 Identities = 15/47 (31%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
 Frame = -2

Query: 374 RWNLMYISAIISRAITTNVISAIITGDCSQ-LIIIVRHSVIWVSRHN 237
           +W+   +  + SR   T  ++ +I G C++   ++VRHS I+VS H+
Sbjct: 299 KWSPPIVPGLHSRVEFTIPVNDLIHGSCTENPHLLVRHS-IYVSIHS 344


>SPBC2G5.02c |||CK2 family regulatory subunit |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 254

 Score = 25.4 bits (53), Expect = 4.0
 Identities = 17/63 (26%), Positives = 30/63 (47%)
 Frame = +3

Query: 210 NCMKIN*TMVVTRNPDDTMTDDNDQLTTIAGNYCRDYIRGYCTRDNCRYIHEIPPIAFLK 389
           N +K+N    VT +  D   +  D L++   +    +I  +C+R    Y  E+    F++
Sbjct: 5   NLIKLNHDPTVTYSTKDDADELFDDLSSSPLHENVSWISWFCSRPGREYFVEVKE-DFIE 63

Query: 390 DLF 398
           DLF
Sbjct: 64  DLF 66


>SPCC1393.06c |||rRNA processing protein Ipi1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 408

 Score = 25.0 bits (52), Expect = 5.2
 Identities = 11/35 (31%), Positives = 20/35 (57%)
 Frame = -3

Query: 106 FIYVVFTIVDELVNHQRQYILLVKKYTTEYSHINI 2
           F   VF++ DE  NH+++   +++K   +   INI
Sbjct: 341 FTEQVFSVADEPNNHRKKISQVLRKINRDIELINI 375


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,713,478
Number of Sequences: 5004
Number of extensions: 32343
Number of successful extensions: 48
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 47
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 48
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 162176800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)