Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_E21
         (444 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_1028 - 21827961-21827972,21828018-21828112,21828286-218283...    36   0.015
08_01_0244 + 2016548-2017101,2017392-2019681,2019785-2019817           32   0.18 
07_01_1143 - 10711023-10711884,10713603-10713826,10714253-107145...    29   1.3  
06_01_0493 - 3536207-3537056,3537603-3537826,3538234-3538503,353...    29   1.3  
05_01_0524 - 4522488-4523762,4524534-4524644,4524794-4524889           29   2.2  
03_05_0811 - 27867228-27867701,27868313-27868497,27869123-27869393     27   5.1  

>04_03_1028 -
           21827961-21827972,21828018-21828112,21828286-21828361,
           21828921-21829037,21829532-21829621,21830011-21830056,
           21831407-21831502,21831599-21832008
          Length = 313

 Score = 35.9 bits (79), Expect = 0.015
 Identities = 18/45 (40%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
 Frame = +3

Query: 309 CRDYIRGYCTR--DNCRYIHEIPPIAFLKDLFRFCHDFQNKGCYR 437
           CRD+ RG C+R  + CR++H  P    L+D    C DF    C R
Sbjct: 186 CRDFTRGRCSRSANECRFLHHSP----LEDCAIVCQDFLRGRCDR 226



 Score = 33.9 bits (74), Expect = 0.059
 Identities = 21/67 (31%), Positives = 29/67 (43%), Gaps = 3/67 (4%)
 Frame = +3

Query: 246 RNPDDTMTDDNDQLTTIAGNYCRDYIRGYCTRDN--CRYIHEIPPIAFLKD-LFRFCHDF 416
           R PD      ND    +    CRD++R  C R +  C+Y H  P +A  +D     C D 
Sbjct: 92  RYPDGKRRRHNDLNVEV----CRDFLRDRCARADIECKYAHPHPTVAVDRDSKVTACADS 147

Query: 417 QNKGCYR 437
               C+R
Sbjct: 148 LRNNCFR 154



 Score = 32.7 bits (71), Expect = 0.14
 Identities = 9/18 (50%), Positives = 14/18 (77%)
 Frame = +3

Query: 309 CRDYIRGYCTRDNCRYIH 362
           CRDY++  C R++CR+ H
Sbjct: 287 CRDYLKNMCNRESCRFAH 304



 Score = 32.3 bits (70), Expect = 0.18
 Identities = 10/18 (55%), Positives = 14/18 (77%)
 Frame = +3

Query: 309 CRDYIRGYCTRDNCRYIH 362
           C+D++RG C R +CRY H
Sbjct: 216 CQDFLRGRCDRKSCRYSH 233


>08_01_0244 + 2016548-2017101,2017392-2019681,2019785-2019817
          Length = 958

 Score = 32.3 bits (70), Expect = 0.18
 Identities = 10/20 (50%), Positives = 16/20 (80%), Gaps = 1/20 (5%)
 Frame = +3

Query: 309 CRDYIRGYCTRD-NCRYIHE 365
           C D+++G C+R  NCRY+H+
Sbjct: 320 CHDFVKGRCSRGANCRYVHD 339



 Score = 29.9 bits (64), Expect = 0.96
 Identities = 11/20 (55%), Positives = 14/20 (70%), Gaps = 1/20 (5%)
 Frame = +3

Query: 309 CRDYIRGYCTR-DNCRYIHE 365
           CRD++ G C R  NCR+ HE
Sbjct: 235 CRDFVAGRCRRGSNCRFPHE 254


>07_01_1143 -
           10711023-10711884,10713603-10713826,10714253-10714522,
           10715071-10715175
          Length = 486

 Score = 29.5 bits (63), Expect = 1.3
 Identities = 12/22 (54%), Positives = 14/22 (63%), Gaps = 1/22 (4%)
 Frame = +3

Query: 309 CRDYIRGYCTRD-NCRYIHEIP 371
           C  Y+RG CTR   C Y HE+P
Sbjct: 163 CSFYVRGECTRGAECPYRHEMP 184


>06_01_0493 -
           3536207-3537056,3537603-3537826,3538234-3538503,
           3539042-3539146
          Length = 482

 Score = 29.5 bits (63), Expect = 1.3
 Identities = 12/22 (54%), Positives = 14/22 (63%), Gaps = 1/22 (4%)
 Frame = +3

Query: 309 CRDYIRGYCTRD-NCRYIHEIP 371
           C  Y+RG CTR   C Y HE+P
Sbjct: 163 CSFYVRGECTRGAECPYRHEMP 184


>05_01_0524 - 4522488-4523762,4524534-4524644,4524794-4524889
          Length = 493

 Score = 28.7 bits (61), Expect = 2.2
 Identities = 11/24 (45%), Positives = 15/24 (62%), Gaps = 1/24 (4%)
 Frame = +3

Query: 297 AGNYCRDYIRGYCTR-DNCRYIHE 365
           A N C  Y   +C++ DNC Y+HE
Sbjct: 93  AANPCYFYYNSHCSKGDNCPYLHE 116


>03_05_0811 - 27867228-27867701,27868313-27868497,27869123-27869393
          Length = 309

 Score = 27.5 bits (58), Expect = 5.1
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = -2

Query: 119 CLNFIYLCCFHYSGRTCKS 63
           CL+  YL C +Y G++C+S
Sbjct: 74  CLDAYYLKCLNYCGQSCRS 92


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,845,409
Number of Sequences: 37544
Number of extensions: 174021
Number of successful extensions: 294
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 282
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 294
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 847740284
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)