Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_E21
         (444 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_49233| Best HMM Match : No HMM Matches (HMM E-Value=.)              37   0.009
SB_51103| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.43 
SB_28644| Best HMM Match : zf-CCCH (HMM E-Value=1.5e-05)               30   0.75 
SB_40708| Best HMM Match : SRCR (HMM E-Value=0)                        29   1.3  
SB_4744| Best HMM Match : Extensin_2 (HMM E-Value=0.23)                29   1.3  
SB_28541| Best HMM Match : Hepar_II_III (HMM E-Value=3.7)              27   9.2  

>SB_49233| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 309

 Score = 36.7 bits (81), Expect = 0.009
 Identities = 23/70 (32%), Positives = 30/70 (42%), Gaps = 6/70 (8%)
 Frame = +3

Query: 246 RNPDDTMTDDNDQLTTIAG-----NYCRDYIRGYCTR-DNCRYIHEIPPIAFLKDLFRFC 407
           + P DT  + N    +  G     N CRDY RG C R   C++ H       L+     C
Sbjct: 12  QTPSDTNNNTNGSSDSGGGGADENNICRDYQRGVCNRGGKCKFRHPEGMGIELQSPPMIC 71

Query: 408 HDFQNKGCYR 437
            D+QN  C R
Sbjct: 72  RDYQNGKCNR 81



 Score = 31.9 bits (69), Expect = 0.24
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = +3

Query: 309 CRDYIRGYCTRDNCRYIH 362
           CRDY  G C R  C+Y+H
Sbjct: 71  CRDYQNGKCNRSTCKYMH 88


>SB_51103| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 216

 Score = 31.1 bits (67), Expect = 0.43
 Identities = 12/30 (40%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
 Frame = +3

Query: 309 CRDYIR-GYCTRDNCRYIHEIPPIAFLKDL 395
           CR ++  G C+RD C Y HE+  ++ L D+
Sbjct: 59  CRQFLSDGGCSRDRCSYAHEVTSLSRLIDV 88


>SB_28644| Best HMM Match : zf-CCCH (HMM E-Value=1.5e-05)
          Length = 267

 Score = 30.3 bits (65), Expect = 0.75
 Identities = 10/23 (43%), Positives = 16/23 (69%), Gaps = 1/23 (4%)
 Frame = +3

Query: 303 NYCRDYIRGYCTR-DNCRYIHEI 368
           N CR +++G C   DNC+Y H++
Sbjct: 139 NACRHFLKGNCWHGDNCKYSHDV 161


>SB_40708| Best HMM Match : SRCR (HMM E-Value=0)
          Length = 1976

 Score = 29.5 bits (63), Expect = 1.3
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = +3

Query: 273  DNDQLTTIAGNYCRDYIRGYCTRDNCRY 356
            DN  +  +A NYCR  I+G C   +  Y
Sbjct: 1571 DNSTIEDVANNYCRKVIKGKCQDSSLCY 1598


>SB_4744| Best HMM Match : Extensin_2 (HMM E-Value=0.23)
          Length = 619

 Score = 29.5 bits (63), Expect = 1.3
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = +3

Query: 342 DNCRYIHEIPPIAFLKDLFRFCH 410
           D+ RYIH   P A+L D  RF H
Sbjct: 50  DSLRYIHSANPSAYLLDSLRFIH 72



 Score = 29.5 bits (63), Expect = 1.3
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = +3

Query: 342 DNCRYIHEIPPIAFLKDLFRFCH 410
           D+ RYIH   P A+L D  RF H
Sbjct: 416 DSLRYIHSANPSAYLLDSLRFIH 438



 Score = 29.5 bits (63), Expect = 1.3
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = +3

Query: 342 DNCRYIHEIPPIAFLKDLFRFCH 410
           D+ RYIH   P A+L D  RF H
Sbjct: 493 DSLRYIHSANPSAYLLDSLRFIH 515



 Score = 29.1 bits (62), Expect = 1.7
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = +3

Query: 342 DNCRYIHEIPPIAFLKDLFRFCH 410
           D+ RYIH   P A+L D  RF H
Sbjct: 541 DSLRYIHPANPSAYLLDSLRFIH 563



 Score = 28.3 bits (60), Expect = 3.0
 Identities = 12/31 (38%), Positives = 15/31 (48%)
 Frame = +3

Query: 342 DNCRYIHEIPPIAFLKDLFRFCHDFQNKGCY 434
           D+ R+IH   P A+L D  RF H       Y
Sbjct: 255 DSLRFIHPANPSAYLLDSLRFIHPANPSAAY 285



 Score = 27.9 bits (59), Expect = 4.0
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +3

Query: 342 DNCRYIHEIPPIAFLKDLFRFCH 410
           D+ R+IH   P A+L D  RF H
Sbjct: 66  DSLRFIHSANPSAYLLDSLRFIH 88



 Score = 27.9 bits (59), Expect = 4.0
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +3

Query: 342 DNCRYIHEIPPIAFLKDLFRFCH 410
           D+ R+IH   P A+L D  RF H
Sbjct: 82  DSLRFIHSANPSAYLLDSLRFIH 104



 Score = 27.9 bits (59), Expect = 4.0
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +3

Query: 342 DNCRYIHEIPPIAFLKDLFRFCH 410
           D+ R+IH   P A+L D  RF H
Sbjct: 127 DSLRFIHSANPSAYLLDSLRFIH 149



 Score = 27.9 bits (59), Expect = 4.0
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +3

Query: 342 DNCRYIHEIPPIAFLKDLFRFCH 410
           D+ R+IH   P A+L D  RF H
Sbjct: 143 DSLRFIHSANPSAYLLDSLRFIH 165



 Score = 27.9 bits (59), Expect = 4.0
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +3

Query: 342 DNCRYIHEIPPIAFLKDLFRFCH 410
           D+ R+IH   P A+L D  RF H
Sbjct: 223 DSLRFIHSANPSAYLLDSLRFIH 245



 Score = 27.9 bits (59), Expect = 4.0
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +3

Query: 342 DNCRYIHEIPPIAFLKDLFRFCH 410
           D+ R+IH   P A+L D  RF H
Sbjct: 239 DSLRFIHSANPSAYLLDSLRFIH 261



 Score = 27.9 bits (59), Expect = 4.0
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +3

Query: 342 DNCRYIHEIPPIAFLKDLFRFCH 410
           D+ R+IH   P A+L D  RF H
Sbjct: 432 DSLRFIHSANPSAYLLDSLRFIH 454



 Score = 27.9 bits (59), Expect = 4.0
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +3

Query: 342 DNCRYIHEIPPIAFLKDLFRFCH 410
           D+ R+IH   P A+L D  RF H
Sbjct: 509 DSLRFIHSANPSAYLLDSLRFIH 531



 Score = 27.5 bits (58), Expect = 5.3
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +3

Query: 342 DNCRYIHEIPPIAFLKDLFRFCH 410
           D+ R+IH   P A+L D  RF H
Sbjct: 159 DSLRFIHPANPSAYLLDSLRFIH 181



 Score = 27.5 bits (58), Expect = 5.3
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +3

Query: 342 DNCRYIHEIPPIAFLKDLFRFCH 410
           D+ R+IH   P A+L D  RF H
Sbjct: 175 DSLRFIHPANPSAYLLDSLRFIH 197



 Score = 27.5 bits (58), Expect = 5.3
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +3

Query: 342 DNCRYIHEIPPIAFLKDLFRFCH 410
           D+ R+IH   P A+L D  RF H
Sbjct: 191 DSLRFIHPANPSAYLLDSLRFIH 213



 Score = 27.5 bits (58), Expect = 5.3
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +3

Query: 342 DNCRYIHEIPPIAFLKDLFRFCH 410
           D+ R+IH   P A+L D  RF H
Sbjct: 207 DSLRFIHPANPSAYLLDSLRFIH 229



 Score = 27.5 bits (58), Expect = 5.3
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +3

Query: 342 DNCRYIHEIPPIAFLKDLFRFCH 410
           D+ R+IH   P A+L D  RF H
Sbjct: 288 DSLRFIHPANPSAYLLDSLRFIH 310



 Score = 27.5 bits (58), Expect = 5.3
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +3

Query: 342 DNCRYIHEIPPIAFLKDLFRFCH 410
           D+ R+IH   P A+L D  RF H
Sbjct: 304 DSLRFIHPANPSAYLLDSLRFIH 326



 Score = 27.5 bits (58), Expect = 5.3
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +3

Query: 342 DNCRYIHEIPPIAFLKDLFRFCH 410
           D+ R+IH   P A+L D  RF H
Sbjct: 320 DSLRFIHPANPSAYLLDSLRFIH 342



 Score = 27.5 bits (58), Expect = 5.3
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +3

Query: 342 DNCRYIHEIPPIAFLKDLFRFCH 410
           D+ R+IH   P A+L D  RF H
Sbjct: 336 DSLRFIHPANPSAYLLDSLRFIH 358



 Score = 27.5 bits (58), Expect = 5.3
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +3

Query: 342 DNCRYIHEIPPIAFLKDLFRFCH 410
           D+ R+IH   P A+L D  RF H
Sbjct: 352 DSLRFIHPANPSAYLLDSLRFIH 374



 Score = 27.5 bits (58), Expect = 5.3
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +3

Query: 342 DNCRYIHEIPPIAFLKDLFRFCH 410
           D+ R+IH   P A+L D  RF H
Sbjct: 368 DSLRFIHPANPSAYLLDSLRFIH 390



 Score = 27.5 bits (58), Expect = 5.3
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +3

Query: 342 DNCRYIHEIPPIAFLKDLFRFCH 410
           D+ R+IH   P A+L D  RF H
Sbjct: 384 DSLRFIHPANPSAYLLDSLRFIH 406


>SB_28541| Best HMM Match : Hepar_II_III (HMM E-Value=3.7)
          Length = 368

 Score = 26.6 bits (56), Expect = 9.2
 Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
 Frame = +3

Query: 240 VTRNPDDTMTDDNDQ-LTTIAGNYCRDYIRGYCTRDNCRYI 359
           +TRN    +T D  Q LT  AG Y  +    Y TRD  +Y+
Sbjct: 130 LTRNAGQYLTRDAGQYLTRDAGQYLAEDAGQYLTRDAGQYL 170


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,317,799
Number of Sequences: 59808
Number of extensions: 237583
Number of successful extensions: 603
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 466
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 596
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 871599479
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)