Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0002_E21
(444 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g11470.1 68417.m01845 protein kinase family protein contains ... 30 0.61
At5g56930.1 68418.m07107 zinc finger (CCCH-type) family protein ... 29 1.4
At3g47120.1 68416.m05116 RNA recognition motif (RRM)-containing ... 28 3.3
At1g21570.1 68414.m02697 zinc finger (CCCH-type) family protein ... 27 4.3
At3g23900.1 68416.m03003 RNA recognition motif (RRM)-containing ... 27 5.7
At3g03110.1 68416.m00307 exportin 1, putative strong similarity ... 27 5.7
At5g17020.1 68418.m01995 exportin1 (XPO1) nearly identical to Ex... 26 10.0
At3g15120.1 68416.m01913 AAA-type ATPase family protein contains... 26 10.0
At1g43590.1 68414.m05004 hypothetical protein contains Pfam doma... 26 10.0
>At4g11470.1 68417.m01845 protein kinase family protein contains
Pfam domain PF00069: Protein kinase domain
Length = 666
Score = 30.3 bits (65), Expect = 0.61
Identities = 12/42 (28%), Positives = 24/42 (57%)
Frame = -2
Query: 338 RAITTNVISAIITGDCSQLIIIVRHSVIWVSRHNHRLIDFHT 213
+ I+T VI AI+ ++++ VIW R +++ + +HT
Sbjct: 274 KKISTGVIVAIVVSAVIFVVLVALGLVIWKRRQSYKTLKYHT 315
>At5g56930.1 68418.m07107 zinc finger (CCCH-type) family protein
contains Pfam domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 675
Score = 29.1 bits (62), Expect = 1.4
Identities = 10/24 (41%), Positives = 15/24 (62%), Gaps = 1/24 (4%)
Frame = +3
Query: 306 YCRDYIRGYCTR-DNCRYIHEIPP 374
YCR Y++G C D C++ H+ P
Sbjct: 355 YCRHYLKGRCHEGDKCKFSHDTIP 378
>At3g47120.1 68416.m05116 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 352
Score = 27.9 bits (59), Expect = 3.3
Identities = 11/24 (45%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
Frame = +3
Query: 297 AGNYCRDYIRGYCTR-DNCRYIHE 365
A CR + RG CTR D+C++ H+
Sbjct: 132 ARGVCRAFQRGECTRGDSCKFSHD 155
>At1g21570.1 68414.m02697 zinc finger (CCCH-type) family protein
contains Pfam domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 470
Score = 27.5 bits (58), Expect = 4.3
Identities = 14/46 (30%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Frame = +3
Query: 309 CRDYIRGYCTRDNCRYIH-EIPPIAFLKDLFRFCHDFQNKGCYRIH 443
C Y++G C + C Y H + PIA + D F + + C + H
Sbjct: 301 CSYYLQGLCNNEACPYRHVHVNPIAPICDGFLKGYCSEGDECRKKH 346
Score = 26.2 bits (55), Expect = 10.0
Identities = 7/22 (31%), Positives = 12/22 (54%)
Frame = +3
Query: 309 CRDYIRGYCTRDNCRYIHEIPP 374
C ++ G C NC+ H++ P
Sbjct: 274 CTKFLNGLCANANCKLTHKVIP 295
>At3g23900.1 68416.m03003 RNA recognition motif (RRM)-containing
protein
Length = 987
Score = 27.1 bits (57), Expect = 5.7
Identities = 10/25 (40%), Positives = 13/25 (52%)
Frame = +3
Query: 300 GNYCRDYIRGYCTRDNCRYIHEIPP 374
G CR+Y+ G C C+ H PP
Sbjct: 257 GEVCREYLNGRCVNSMCKLNH--PP 279
>At3g03110.1 68416.m00307 exportin 1, putative strong similarity to
Exportin1 (XPO1) protein [Arabidopsis thaliana]
GI:7671510; contains Pfam profile PF03810: Importin-beta
N-terminal domain
Length = 1076
Score = 27.1 bits (57), Expect = 5.7
Identities = 16/38 (42%), Positives = 20/38 (52%)
Frame = -2
Query: 338 RAITTNVISAIITGDCSQLIIIVRHSVIWVSRHNHRLI 225
RAI T A+I QL +++ SVIW RH R I
Sbjct: 857 RAIATFCFRALIQLSSEQLKLVM-DSVIWAFRHTERNI 893
>At5g17020.1 68418.m01995 exportin1 (XPO1) nearly identical to
Exportin1 (XPO1) protein [Arabidopsis thaliana]
GI:7671510
Length = 1075
Score = 26.2 bits (55), Expect = 10.0
Identities = 15/38 (39%), Positives = 20/38 (52%)
Frame = -2
Query: 338 RAITTNVISAIITGDCSQLIIIVRHSVIWVSRHNHRLI 225
RAI T A+I QL +++ S+IW RH R I
Sbjct: 856 RAIATFCFPALIKLSSPQLKLVM-DSIIWAFRHTERNI 892
>At3g15120.1 68416.m01913 AAA-type ATPase family protein contains
PROSITE domains, PS00674: AAA-protein family signature
and PS00017: ATP/GTP-binding site motif A (P-loop)
Length = 1954
Score = 26.2 bits (55), Expect = 10.0
Identities = 9/19 (47%), Positives = 14/19 (73%)
Frame = +3
Query: 339 RDNCRYIHEIPPIAFLKDL 395
+D CRYI + +A+L+DL
Sbjct: 1533 KDRCRYIRILSQVAYLEDL 1551
>At1g43590.1 68414.m05004 hypothetical protein contains Pfam
domain, PF04827: Protein of unknown function (DUF635)
Length = 168
Score = 26.2 bits (55), Expect = 10.0
Identities = 8/16 (50%), Positives = 13/16 (81%)
Frame = +3
Query: 15 EYSVVYFLTNNIYCRW 62
EY++ Y+LT+ IY +W
Sbjct: 9 EYNLAYYLTDEIYPKW 24
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,484,247
Number of Sequences: 28952
Number of extensions: 156054
Number of successful extensions: 262
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 261
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 262
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 712739520
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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