Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_E20
         (654 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC15A10.15 |sgo2||shugoshin Sgo2|Schizosaccharomyces pombe|chr...    27   1.8  
SPAC12B10.05 |||metallopeptidase|Schizosaccharomyces pombe|chr 1...    27   2.4  
SPBC776.15c |||dihydrolipoamide S-succinyltransferase, e2 compon...    27   2.4  
SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|ch...    26   4.1  
SPBC4.02c |||conserved fungal protein|Schizosaccharomyces pombe|...    26   5.5  
SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces...    26   5.5  
SPBC16H5.12c |||conserved fungal protein|Schizosaccharomyces pom...    25   9.5  

>SPAC15A10.15 |sgo2||shugoshin Sgo2|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 647

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 16/40 (40%), Positives = 25/40 (62%), Gaps = 3/40 (7%)
 Frame = +3

Query: 327 QIKTFKEM---NERLLSEVESLKALNERLLSENAALRSEA 437
           QI+ +KE+   ++     ++ L+  NERLLSEN  LR+ A
Sbjct: 17  QIRQYKEIIRISKAQSIRIKELQLENERLLSENIDLRTTA 56


>SPAC12B10.05 |||metallopeptidase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 486

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 15/46 (32%), Positives = 23/46 (50%)
 Frame = +3

Query: 351 NERLLSEVESLKALNERLLSENAALRSEAAARSVPEAQRPAESTPR 488
           N RL S++   K  N   L+++A    +A   + P   +P E TPR
Sbjct: 16  NYRLRSQIIKYKYSNVSYLNKSALRCGQATDSTHPHILQPGELTPR 61


>SPBC776.15c |||dihydrolipoamide S-succinyltransferase, e2 component
           of oxoglutarate dehydrogenase complex
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 452

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 15/54 (27%), Positives = 29/54 (53%), Gaps = 3/54 (5%)
 Frame = +3

Query: 375 ESLKALNERLLSENAALRSEAAARSV---PEAQRPAESTPRQKEGHPEAVRAAR 527
           +S K + E+ + +  A + E+A  S    P+A+ P  S+P+ K    E V+ ++
Sbjct: 151 DSSKPIEEKPMPDLGAEQKESAPSSTKPAPDAKEPEFSSPKPKPAKSEPVKQSK 204


>SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 750

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 19/88 (21%), Positives = 41/88 (46%)
 Frame = +3

Query: 219 DHLSWEEKMQRKKLKNRVAAQTSXXXXXXXXXXXXSQIKTFKEMNERLLSEVESLKALNE 398
           ++L  + + Q +KL + ++ Q S              I+   E+ E++ S +ES +++ +
Sbjct: 122 ENLKHQFEDQIEKLNSEISNQNSLILQKKDELE--KSIQRCSELEEKINS-LESAQSIEQ 178

Query: 399 RLLSENAALRSEAAARSVPEAQRPAEST 482
            ++S     ++      VPE  RP+  T
Sbjct: 179 EVISSLKDDKTVETKNDVPEVSRPSTDT 206


>SPBC4.02c |||conserved fungal protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 456

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 12/39 (30%), Positives = 19/39 (48%)
 Frame = -1

Query: 603 IEGIEYSSESKCARRSARGDTSPAVCEPREPPPGALPSA 487
           I  I  S  +  +RR++    S  +CEP  PP  +  S+
Sbjct: 293 IAEIMESVSANSSRRNSHDSNSTIICEPEYPPDTSFNSS 331


>SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1727

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 15/42 (35%), Positives = 24/42 (57%)
 Frame = +3

Query: 342 KEMNERLLSEVESLKALNERLLSENAALRSEAAARSVPEAQR 467
           K   ERL+SE + L A  ERL+S  + L++    + + +A R
Sbjct: 765 KRTQERLISENDKLLAERERLMSLVSDLQTFLNQQQLSDAAR 806


>SPBC16H5.12c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 682

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +2

Query: 560 LLAHFDSEEYSIPSINLQTPSSKRLMQV 643
           +L  F S EYSIP++N+       L+Q+
Sbjct: 114 VLEKFRSGEYSIPNLNIVDELHSYLLQI 141


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,384,839
Number of Sequences: 5004
Number of extensions: 44728
Number of successful extensions: 153
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 153
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)