Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_E20
         (654 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    23   1.9  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    23   1.9  
EF032397-1|ABM97933.1|  200|Apis mellifera arginine kinase protein.    23   2.6  
AF023619-1|AAC39040.1|  355|Apis mellifera arginine kinase protein.    23   2.6  
AB083209-1|BAC54133.1|   87|Apis mellifera hypothetical protein ...    22   6.0  

>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 11/34 (32%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
 Frame = -3

Query: 142 FFGTVIMIGALMLTYNYTTLNHNI--TALLPCYI 47
           FF   + +GAL+   +Y   N+N+   AL+ C +
Sbjct: 288 FFSYALGLGALVALGSYNKFNNNVYKDALIVCTV 321


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 11/34 (32%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
 Frame = -3

Query: 142 FFGTVIMIGALMLTYNYTTLNHNI--TALLPCYI 47
           FF   + +GAL+   +Y   N+N+   AL+ C +
Sbjct: 341 FFSYALGLGALVALGSYNKFNNNVYKDALIVCTV 374


>EF032397-1|ABM97933.1|  200|Apis mellifera arginine kinase protein.
          Length = 200

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = -1

Query: 303 LSSCHATFAPLRDSSTFFFAFFLPMINDLNGVF 205
           L S    +AP  ++ T F   F P+I D +G F
Sbjct: 44  LDSGVGIYAPDAEAYTLFADLFDPIIEDYHGGF 76


>AF023619-1|AAC39040.1|  355|Apis mellifera arginine kinase protein.
          Length = 355

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = -1

Query: 303 LSSCHATFAPLRDSSTFFFAFFLPMINDLNGVF 205
           L S    +AP  ++ T F   F P+I D +G F
Sbjct: 60  LDSGVGIYAPDAEAYTLFADLFDPIIEDYHGGF 92


>AB083209-1|BAC54133.1|   87|Apis mellifera hypothetical protein
           protein.
          Length = 87

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = -1

Query: 510 PPGALPSAEE*TLLVFGPPGRFAPPPHCAALR 415
           PPG  P+ E+ + ++ G  G    PP+ A  R
Sbjct: 52  PPGPPPNNEDSSGVIVGASGYGFVPPNQAFYR 83


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 167,780
Number of Sequences: 438
Number of extensions: 3698
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19804986
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)