Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0002_E19
(507 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1840.03 |sal3|pse1|karyopherin Sal3|Schizosaccharomyces pomb... 27 1.2
SPAC10F6.01c ||SPAC4C5.05c|sulfite reductase beta subunit |Schiz... 27 1.6
SPCC188.11 |prp45|cwf13, snw1, SPCC584.08|transcriptional regula... 26 2.8
SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-gluca... 26 2.8
SPBC1718.02 |hop1||linear element associated protein Hop1|Schizo... 26 3.7
SPAC12D12.09 |rev7||DNA polymerase zeta Rev7 |Schizosaccharomyce... 26 3.7
SPAC513.05 |ams1||alpha-mannosidase |Schizosaccharomyces pombe|c... 25 4.9
SPAPB1E7.08c |||membrane transporter|Schizosaccharomyces pombe|c... 25 6.5
SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces po... 25 6.5
SPAC18G6.05c |||translation elongation regulator Gcn1 |Schizosac... 25 8.6
SPBC11C11.06c |||sequence orphan|Schizosaccharomyces pombe|chr 2... 25 8.6
>SPCC1840.03 |sal3|pse1|karyopherin Sal3|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1095
Score = 27.5 bits (58), Expect = 1.2
Identities = 13/35 (37%), Positives = 22/35 (62%)
Frame = +1
Query: 64 EVKEWIAPPEFDHAEAEARHLVFEADGDADERLTR 168
E++EW+ + D E++A H+V E A +RL+R
Sbjct: 330 ELQEWLNTDDLDQDESDANHVVAE---QAMDRLSR 361
>SPAC10F6.01c ||SPAC4C5.05c|sulfite reductase beta subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1473
Score = 27.1 bits (57), Expect = 1.6
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = +1
Query: 58 EGEVKEWIAPPEFDHAEAEA 117
EG +KE PP+FD E +A
Sbjct: 223 EGNIKEAFVPPKFDQPERDA 242
>SPCC188.11 |prp45|cwf13, snw1, SPCC584.08|transcriptional regulator
Prp45|Schizosaccharomyces pombe|chr 3|||Manual
Length = 557
Score = 26.2 bits (55), Expect = 2.8
Identities = 13/34 (38%), Positives = 21/34 (61%)
Frame = -1
Query: 234 ERLAEVGRLGADEQVVLVEYLRPREPLVRVAVRL 133
E+ + R+GA+++ L E RPR+ RVA+ L
Sbjct: 403 EKDLRLSRMGAEKRAKLAEKDRPRDVAERVALGL 436
>SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-glucan
synthase Ags1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 2410
Score = 26.2 bits (55), Expect = 2.8
Identities = 15/47 (31%), Positives = 22/47 (46%)
Frame = -2
Query: 425 KLNHFEGGCFFCVKILNKSALSGGVFFLAFHRS*SRDSVIEIFPSLS 285
KL GC C + +++ S F+ H S SR S E+ P+ S
Sbjct: 1607 KLEALTDGCIKCSQKYGRNSRSRSSFYSLIHESFSRSS--EVLPTSS 1651
>SPBC1718.02 |hop1||linear element associated protein
Hop1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 528
Score = 25.8 bits (54), Expect = 3.7
Identities = 10/32 (31%), Positives = 18/32 (56%)
Frame = +3
Query: 267 LVHRREGKGWKYFDNTVPRL*SVKSEKKNTPA 362
++++ + + W YF N P + S EK TP+
Sbjct: 442 IIYKEKKRKWIYFTNKSPEMVSYLREKYFTPS 473
>SPAC12D12.09 |rev7||DNA polymerase zeta Rev7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 213
Score = 25.8 bits (54), Expect = 3.7
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = +1
Query: 4 EREQFTGYRDTNKDGFMDEGEVKEWIAPPEFDHAEA 111
E+E R T KDGF + +EW PP+ +A
Sbjct: 146 EQECTWTLRVTLKDGFPRPKQWEEWFLPPQARETDA 181
>SPAC513.05 |ams1||alpha-mannosidase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1077
Score = 25.4 bits (53), Expect = 4.9
Identities = 9/35 (25%), Positives = 19/35 (54%)
Frame = +1
Query: 10 EQFTGYRDTNKDGFMDEGEVKEWIAPPEFDHAEAE 114
+Q ++ D F+ EG+ +++ P +DHA +
Sbjct: 14 KQVDSIYESRLDQFLSEGQYRDFNLPSVYDHARID 48
>SPAPB1E7.08c |||membrane transporter|Schizosaccharomyces pombe|chr
1|||Manual
Length = 554
Score = 25.0 bits (52), Expect = 6.5
Identities = 7/14 (50%), Positives = 11/14 (78%)
Frame = +3
Query: 264 ALVHRREGKGWKYF 305
++ HR + KGW+YF
Sbjct: 240 SVCHRADNKGWRYF 253
>SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 646
Score = 25.0 bits (52), Expect = 6.5
Identities = 10/46 (21%), Positives = 20/46 (43%)
Frame = +1
Query: 58 EGEVKEWIAPPEFDHAEAEARHLVFEADGDADERLTRAEILDKYDL 195
+ V+ W DH ++ + + G +E R + LDK ++
Sbjct: 55 QNRVRNWAVIAHIDHGKSTLSDCILKLTGVINEHNFRNQFLDKLEV 100
>SPAC18G6.05c |||translation elongation regulator Gcn1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2670
Score = 24.6 bits (51), Expect = 8.6
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = -3
Query: 343 SLFTDHNLGTVLSKYFHPFPSL 278
S +TD L +LS FHP S+
Sbjct: 1061 STYTDEELNLLLSNLFHPESSI 1082
>SPBC11C11.06c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 178
Score = 24.6 bits (51), Expect = 8.6
Identities = 12/35 (34%), Positives = 18/35 (51%)
Frame = +2
Query: 296 EIFR*HCPEIMICEKREKKHPRLKRIYLEF*HKKN 400
EI R H PE EK + P ++ + E ++KN
Sbjct: 14 EIVREHAPEQTAAEKAAPQPPEVEEVLSEEPYQKN 48
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,707,054
Number of Sequences: 5004
Number of extensions: 31904
Number of successful extensions: 86
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 86
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 86
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 202220600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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