Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_E19
         (507 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_8971| Best HMM Match : efhand (HMM E-Value=2.3e-11)                 77   6e-15
SB_43954| Best HMM Match : efhand (HMM E-Value=4.3e-23)                75   3e-14
SB_52118| Best HMM Match : No HMM Matches (HMM E-Value=.)              74   6e-14
SB_23016| Best HMM Match : efhand (HMM E-Value=3e-12)                  64   6e-11
SB_40462| Best HMM Match : No HMM Matches (HMM E-Value=.)              53   1e-07
SB_37673| Best HMM Match : No HMM Matches (HMM E-Value=.)              51   5e-07
SB_15862| Best HMM Match : No HMM Matches (HMM E-Value=.)              34   0.077
SB_11108| Best HMM Match : ABC_tran (HMM E-Value=0)                    31   0.41 
SB_54601| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   0.95 
SB_30673| Best HMM Match : efhand (HMM E-Value=0.00017)                29   2.9  
SB_8146| Best HMM Match : efhand (HMM E-Value=1.2e-16)                 27   6.7  
SB_29950| Best HMM Match : A2M_comp (HMM E-Value=7.1)                  27   6.7  

>SB_8971| Best HMM Match : efhand (HMM E-Value=2.3e-11)
          Length = 234

 Score = 77.4 bits (182), Expect = 6e-15
 Identities = 41/86 (47%), Positives = 56/86 (65%), Gaps = 2/86 (2%)
 Frame = +1

Query: 1   QEREQFTGYRDTNKDGFMDEGEVKEWIAPPEFDHAEAEARHLVFEADGDADERLTRAEIL 180
           +ERE F    D NKDG +D  EV+ W+ P + +  + EA+HL+  +D +AD  L   EIL
Sbjct: 150 KEREDFAKQFDKNKDGKLDREEVRAWVLPEKGESLD-EAKHLIDGSDENADGDLQLDEIL 208

Query: 181 DKYDLFVGSQATDFGEAL--VRHDEF 252
             +DLFVGS+ATD GE L  ++HDEF
Sbjct: 209 LHWDLFVGSKATDHGETLRKMKHDEF 234


>SB_43954| Best HMM Match : efhand (HMM E-Value=4.3e-23)
          Length = 308

 Score = 75.4 bits (177), Expect = 3e-14
 Identities = 40/83 (48%), Positives = 53/83 (63%), Gaps = 2/83 (2%)
 Frame = +1

Query: 4   EREQFTGYRDTNKDGFMDEGEVKEWIAPPEFDH--AEAEARHLVFEADGDADERLTRAEI 177
           E  +F    D NKDG +D+ EV+ WI P E DH  A  EA+HLV  AD ++D +LT  EI
Sbjct: 226 ETNRFNEEYDKNKDGKLDKSEVRLWILP-ETDHLMAAEEAKHLVSSADDNSDGKLTIEEI 284

Query: 178 LDKYDLFVGSQATDFGEALVRHD 246
              Y +FVGS+ATD+G AL + +
Sbjct: 285 EKNYAVFVGSEATDYGRALPKEE 307



 Score = 31.1 bits (67), Expect = 0.55
 Identities = 16/55 (29%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
 Frame = +1

Query: 31  DTNKDGFMDEGEVKEWIAPPEF-DHAEAEARHLVFEADGDADERLTRAEILDKYD 192
           DTNKDGF+   E+  ++ P    + +E      + + D D D  ++  E L +Y+
Sbjct: 159 DTNKDGFLTREEMAIFLHPESSPEMSEVHILETIEDIDRDKDGLISLKEFLGEYE 213


>SB_52118| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 252

 Score = 74.1 bits (174), Expect = 6e-14
 Identities = 33/71 (46%), Positives = 51/71 (71%)
 Frame = +1

Query: 40  KDGFMDEGEVKEWIAPPEFDHAEAEARHLVFEADGDADERLTRAEILDKYDLFVGSQATD 219
           + G +D  E+K+++ P  +DH  AEA+HL+ E D + D  LT+ EI+D ++ FVGS+A +
Sbjct: 183 RTGRLDRRELKDYLFPA-YDHVGAEAQHLINEVDKNEDGMLTKDEIMDNFEKFVGSRAAE 241

Query: 220 FGEALVRHDEF 252
           FG+AL RH+EF
Sbjct: 242 FGQALNRHEEF 252


>SB_23016| Best HMM Match : efhand (HMM E-Value=3e-12)
          Length = 387

 Score = 64.1 bits (149), Expect = 6e-11
 Identities = 27/46 (58%), Positives = 33/46 (71%)
 Frame = +1

Query: 4   EREQFTGYRDTNKDGFMDEGEVKEWIAPPEFDHAEAEARHLVFEAD 141
           EREQF   RD N+DG MD+ EV++WI P +FDH  AE  HL+ EAD
Sbjct: 247 EREQFLTVRDKNRDGKMDKDEVRDWIVPADFDHVGAEVTHLINEAD 292


>SB_40462| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1580

 Score = 53.2 bits (122), Expect = 1e-07
 Identities = 30/84 (35%), Positives = 45/84 (53%)
 Frame = +1

Query: 1    QEREQFTGYRDTNKDGFMDEGEVKEWIAPPEFDHAEAEARHLVFEADGDADERLTRAEIL 180
            ++R++     D N DG +   E+  ++ P    HA  EA +L+  AD + D +L+  E+L
Sbjct: 1499 EDRKREFKLMDKNGDGVVKLDELALYLDPRNEQHAANEASYLISVADKNKDAKLSELEML 1558

Query: 181  DKYDLFVGSQATDFGEALVRHDEF 252
              Y LF GS   +F  A V HDEF
Sbjct: 1559 QNYQLFTGSSLANF--AGVLHDEF 1580


>SB_37673| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 97

 Score = 51.2 bits (117), Expect = 5e-07
 Identities = 24/62 (38%), Positives = 38/62 (61%)
 Frame = +1

Query: 31  DTNKDGFMDEGEVKEWIAPPEFDHAEAEARHLVFEADGDADERLTRAEILDKYDLFVGSQ 210
           D NKDG +D+ E++ W+ P + D A+ E  H++ EAD + D +L+  EIL    +FV + 
Sbjct: 31  DKNKDGKLDQTEIRHWLFPDD-DMAKEEPAHMIKEADDNKDGKLSMEEILKHSSVFVDNG 89

Query: 211 AT 216
            T
Sbjct: 90  ET 91


>SB_15862| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 289

 Score = 33.9 bits (74), Expect = 0.077
 Identities = 14/28 (50%), Positives = 21/28 (75%)
 Frame = +1

Query: 151 DERLTRAEILDKYDLFVGSQATDFGEAL 234
           D  LT  EI+++Y+LF GS+AT++G  L
Sbjct: 258 DNFLTVDEIMERYELFAGSRATNYGNML 285


>SB_11108| Best HMM Match : ABC_tran (HMM E-Value=0)
          Length = 1266

 Score = 31.5 bits (68), Expect = 0.41
 Identities = 18/57 (31%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
 Frame = -1

Query: 306  RNISIPFPLSGVRARDVLEL-VVADERLAEVGRLGADEQVVLVEYLRPREPLVRVAV 139
            + +S+ +   G R  D + L V+  E++  VGR GA +  ++    R REP  R+ V
Sbjct: 1028 QGVSLEYLEGGTRVLDGVSLEVLPKEKVGIVGRTGAGKSSLVAALFRIREPKGRIVV 1084


>SB_54601| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1718

 Score = 30.3 bits (65), Expect = 0.95
 Identities = 22/69 (31%), Positives = 34/69 (49%), Gaps = 1/69 (1%)
 Frame = +1

Query: 127 VFEADGDADERLTRAEILD-KYDLFVGSQATDFGEALVRHDEF*NVPRSYTGERERDGNI 303
           VF+ D +++  L  +E+ D   DLF+ +  T F    +R         SYT   E+DGN+
Sbjct: 518 VFDQDKESNGPLFESEVNDDNSDLFI-TYVTPFARGPIRPTLSLR-HLSYTSNHEKDGNL 575

Query: 304 SITLSRDYD 330
            I+  R  D
Sbjct: 576 EISRERYLD 584


>SB_30673| Best HMM Match : efhand (HMM E-Value=0.00017)
          Length = 256

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 10/17 (58%), Positives = 14/17 (82%)
 Frame = +1

Query: 31 DTNKDGFMDEGEVKEWI 81
          D NKDGF++E E++ WI
Sbjct: 40 DINKDGFVEEAELEIWI 56


>SB_8146| Best HMM Match : efhand (HMM E-Value=1.2e-16)
          Length = 285

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 11/45 (24%), Positives = 28/45 (62%)
 Frame = +1

Query: 31  DTNKDGFMDEGEVKEWIAPPEFDHAEAEARHLVFEADGDADERLT 165
           D + DGF+  G++K+ +   + + ++ + + ++ +AD D D R++
Sbjct: 83  DKDGDGFITFGDLKKTMQECDENLSDDDLKRMIIDADLDEDGRVS 127


>SB_29950| Best HMM Match : A2M_comp (HMM E-Value=7.1)
          Length = 419

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = -1

Query: 345 SRFSQIIISGQCYRNISIP 289
           SR  QI++SG C   +SIP
Sbjct: 226 SRLQQIVLSGSCVARVSIP 244


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,217,535
Number of Sequences: 59808
Number of extensions: 218186
Number of successful extensions: 598
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 533
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 595
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1111677931
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)