Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_E18
         (454 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC12G12.03 |cip2||RNA-binding protein Cip2|Schizosaccharomyces...    31   0.11 
SPCC1450.11c |cek1||serine/threonine protein kinase Cek1|Schizos...    29   0.44 
SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase Mok11|S...    26   3.1  
SPAC926.09c |fas1||fatty acid synthase beta subunit Fas1|Schizos...    26   3.1  
SPBC15D4.09c |||cystathionine gamma-synthase |Schizosaccharomyce...    26   3.1  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    25   4.1  
SPBP23A10.14c |ell1||RNA polymerase II transcription elongation ...    25   5.4  
SPMIT.04 |cox3||cytochrome c oxidase 3|Schizosaccharomyces pombe...    25   7.2  
SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr ...    25   7.2  
SPCC74.04 |||amino acid permease, unknown 15|Schizosaccharomyces...    24   9.5  
SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase comple...    24   9.5  
SPBC119.11c |pac1|hcs|double-strand-specific ribonuclease Pac1|S...    24   9.5  
SPCC417.06c |ppk35|mug27|serine/threonine protein kinase Ppk35|S...    24   9.5  

>SPAC12G12.03 |cip2||RNA-binding protein Cip2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 576

 Score = 30.7 bits (66), Expect = 0.11
 Identities = 16/46 (34%), Positives = 26/46 (56%)
 Frame = +1

Query: 49  MLRNRVHVVDNSGVPSDGHSDHVVIANPDPFFSQPSNGPSGNYEPI 186
           +L +R+++  N  V  DG +  VVI  P   F+ P+N  S N+ P+
Sbjct: 394 LLASRLNL--NHSVTGDGEAKQVVITMPSTHFT-PANNSSANHSPL 436


>SPCC1450.11c |cek1||serine/threonine protein kinase
           Cek1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1338

 Score = 28.7 bits (61), Expect = 0.44
 Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
 Frame = +1

Query: 103 HSDHVVIANPDPFFSQPSNGPSGNY-EPISTGPAF-VDFNHPNYPPKRYDNP 252
           H  HV ++NPD     P +  S NY  P+    A   +F+ P +   +Y +P
Sbjct: 475 HLSHVSLSNPDFAIGSPMSQDSSNYSSPLHRRKASDSNFSDPRFDDLKYLSP 526


>SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase
            Mok11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2397

 Score = 25.8 bits (54), Expect = 3.1
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = +3

Query: 216  SSQLSTQAIRQPSRPVVGSKCPH 284
            SSQLS  ++R   RP   SK PH
Sbjct: 1821 SSQLSIDSVRSGMRPFSLSKVPH 1843


>SPAC926.09c |fas1||fatty acid synthase beta subunit
            Fas1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2073

 Score = 25.8 bits (54), Expect = 3.1
 Identities = 12/29 (41%), Positives = 15/29 (51%), Gaps = 4/29 (13%)
 Frame = +1

Query: 139  FFSQPSNGP----SGNYEPISTGPAFVDF 213
            F + P+N P    SG+Y PI   P F  F
Sbjct: 1560 FVTPPTNSPYAEVSGDYNPIHVSPTFAAF 1588


>SPBC15D4.09c |||cystathionine gamma-synthase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 610

 Score = 25.8 bits (54), Expect = 3.1
 Identities = 13/48 (27%), Positives = 26/48 (54%)
 Frame = -2

Query: 321 SSFLLVLKSLIFNEDIYFPPRGERVVVSLGWIIGMIEIDERRSSAYGF 178
           S +L  +K L  ++D++  P G   + +   I+ ++  D R+S  +GF
Sbjct: 282 SQYLREVKGLS-HDDVFLFPTGMSAIYNTHRILRLVLDDSRKSVCFGF 328


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 25.4 bits (53), Expect = 4.1
 Identities = 11/30 (36%), Positives = 13/30 (43%)
 Frame = +1

Query: 145 SQPSNGPSGNYEPISTGPAFVDFNHPNYPP 234
           S P N P     P+S  PA    + P  PP
Sbjct: 265 SSPPNSPPRPIAPVSMNPAINSTSKPPLPP 294


>SPBP23A10.14c |ell1||RNA polymerase II transcription elongation
           factor SpELL|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 533

 Score = 25.0 bits (52), Expect = 5.4
 Identities = 15/68 (22%), Positives = 28/68 (41%), Gaps = 2/68 (2%)
 Frame = +1

Query: 34  SSRIGMLRNRVHVVDNSGVPSDGHSDHVVIANPDPF--FSQPSNGPSGNYEPISTGPAFV 207
           + R  +L    +  DN  +P D     ++++        +     P    +P S  P+F+
Sbjct: 264 ADRNAVLSRMSNAFDNMQLPPDAPERSLLVSKQKNITKLNNEKRIPPQLAQPTSHVPSFI 323

Query: 208 DFNHPNYP 231
           D N P+ P
Sbjct: 324 DTNSPSMP 331


>SPMIT.04 |cox3||cytochrome c oxidase 3|Schizosaccharomyces
           pombe|chr mitochondrial|||Manual
          Length = 273

 Score = 24.6 bits (51), Expect = 7.2
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = +1

Query: 79  NSGVPSDGHSDHVVIANPDPFF 144
           N      GH  H+V A+P PFF
Sbjct: 6   NLSTKFQGHPYHIVSASPWPFF 27


>SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 422

 Score = 24.6 bits (51), Expect = 7.2
 Identities = 11/27 (40%), Positives = 15/27 (55%), Gaps = 2/27 (7%)
 Frame = +1

Query: 169 GNYEPI--STGPAFVDFNHPNYPPKRY 243
           G+Y P   ST P    + +P+YPP  Y
Sbjct: 117 GSYPPTQPSTQPLPQSYGYPSYPPAGY 143


>SPCC74.04 |||amino acid permease, unknown 15|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 557

 Score = 24.2 bits (50), Expect = 9.5
 Identities = 11/35 (31%), Positives = 17/35 (48%)
 Frame = +1

Query: 139 FFSQPSNGPSGNYEPISTGPAFVDFNHPNYPPKRY 243
           + +Q   GPS NY   +     V+  +PNY  + Y
Sbjct: 151 YIAQLVGGPSINYSTAAMLLGAVNIGNPNYEVQNY 185


>SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase complex
            subunit Pst1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1522

 Score = 24.2 bits (50), Expect = 9.5
 Identities = 13/37 (35%), Positives = 16/37 (43%)
 Frame = +1

Query: 94   SDGHSDHVVIANPDPFFSQPSNGPSGNYEPISTGPAF 204
            SD   DH V  +  P F   S+ P  + E  S  P F
Sbjct: 1443 SDVEDDHDVAKSTAPDFETSSHRPERSSEKKSPSPVF 1479


>SPBC119.11c |pac1|hcs|double-strand-specific ribonuclease
           Pac1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 363

 Score = 24.2 bits (50), Expect = 9.5
 Identities = 9/34 (26%), Positives = 14/34 (41%)
 Frame = +1

Query: 133 DPFFSQPSNGPSGNYEPISTGPAFVDFNHPNYPP 234
           +P   +PS+ P       +  P   +F    YPP
Sbjct: 99  EPVIEEPSSHPKNQKNQENNEPTSEEFEEGEYPP 132


>SPCC417.06c |ppk35|mug27|serine/threonine protein kinase
           Ppk35|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 624

 Score = 24.2 bits (50), Expect = 9.5
 Identities = 11/32 (34%), Positives = 15/32 (46%)
 Frame = +3

Query: 114 RCYCEPGSFLLSTIKRS*RKL*THKHWTGVRR 209
           +C  EP S   STI+          HW G+R+
Sbjct: 444 KCLTEPTSRFQSTIEIQKHPFFKRLHWNGLRK 475


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,685,609
Number of Sequences: 5004
Number of extensions: 32370
Number of successful extensions: 82
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 81
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 82
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 168258430
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)