Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0002_E18
(454 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_0216 + 15804110-15804284,15804341-15804351 31 0.33
06_01_0486 - 3455030-3455770 29 1.7
03_05_0517 - 25118232-25118730,25119002-25119273 28 3.1
03_05_0142 - 21217375-21217518,21217851-21217899,21218191-212182... 28 3.1
11_04_0321 - 16359390-16359539,16359674-16359746,16360448-163608... 28 4.0
03_02_0259 - 6920472-6920579,6920744-6921022,6921115-6921390,692... 28 4.0
03_02_0260 - 6924532-6924757,6925443-6925546,6925729-6926007,692... 27 5.3
09_06_0244 + 21822811-21823246,21823337-21823468,21823949-218240... 27 7.1
01_05_0562 - 23307526-23307875,23308149-23308452,23308543-23308647 27 7.1
07_03_0866 - 22134215-22135351 27 9.3
07_03_0202 + 15131001-15131047,15131488-15131754,15131913-151319... 27 9.3
02_05_0763 + 31583449-31583747,31584095-31584230,31584544-315845... 27 9.3
>12_02_0216 + 15804110-15804284,15804341-15804351
Length = 61
Score = 31.5 bits (68), Expect = 0.33
Identities = 15/41 (36%), Positives = 20/41 (48%)
Frame = +1
Query: 82 SGVPSDGHSDHVVIANPDPFFSQPSNGPSGNYEPISTGPAF 204
SG P+ + +H V FF+ SN SGNY + G F
Sbjct: 12 SGSPAPPYKNHTVAGADGWFFNATSNTTSGNYSDWAAGETF 52
>06_01_0486 - 3455030-3455770
Length = 246
Score = 29.1 bits (62), Expect = 1.7
Identities = 15/34 (44%), Positives = 19/34 (55%), Gaps = 3/34 (8%)
Frame = -1
Query: 139 KDPGS-Q*QRGHYGRPME--HHYCPPRELCCAAC 47
K PGS GH+G+P E HH+ PP C +C
Sbjct: 42 KPPGSGSGGGGHHGKPPEHHHHHKPPPSPRCPSC 75
>03_05_0517 - 25118232-25118730,25119002-25119273
Length = 256
Score = 28.3 bits (60), Expect = 3.1
Identities = 12/37 (32%), Positives = 16/37 (43%)
Frame = +1
Query: 133 DPFFSQPSNGPSGNYEPISTGPAFVDFNHPNYPPKRY 243
D FF++ P GN T P VD P P + +
Sbjct: 37 DWFFTRKGESPQGNISKEETAPTGVDVTDPGRPGRAF 73
>03_05_0142 -
21217375-21217518,21217851-21217899,21218191-21218258,
21218368-21218413,21218548-21218641,21218775-21218837,
21219018-21219171,21219414-21219476,21219568-21219681,
21219779-21219844,21220813-21220870,21221859-21221932,
21222045-21222110,21223139-21223187,21223483-21223550,
21223660-21223705,21223908-21224001,21224117-21224179,
21224290-21224412,21224503-21224536,21224906-21224968,
21225825-21225911,21226293-21226370
Length = 587
Score = 28.3 bits (60), Expect = 3.1
Identities = 13/43 (30%), Positives = 20/43 (46%)
Frame = +1
Query: 133 DPFFSQPSNGPSGNYEPISTGPAFVDFNHPNYPPKRYDNPLAP 261
+PF + S G S S G + + P+ PP + +PL P
Sbjct: 298 NPFADKASKGGSAGQSSYSGGAFYTTQSRPSAPPATHLSPLPP 340
>11_04_0321 -
16359390-16359539,16359674-16359746,16360448-16360845,
16360919-16362673,16362751-16362861,16363745-16363962,
16364088-16364196
Length = 937
Score = 27.9 bits (59), Expect = 4.0
Identities = 9/12 (75%), Positives = 10/12 (83%)
Frame = +1
Query: 226 YPPKRYDNPLAP 261
YPPKRY NP+ P
Sbjct: 859 YPPKRYSNPVGP 870
>03_02_0259 -
6920472-6920579,6920744-6921022,6921115-6921390,
6921473-6921691,6921795-6921963,6922248-6922422,
6922490-6922601,6923343-6923573
Length = 522
Score = 27.9 bits (59), Expect = 4.0
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = +1
Query: 70 VVDNSGVPSDGHSDHVVIANPDPFFSQP 153
V++N +P H HV++ANP P P
Sbjct: 240 VLENCQLPHPNHG-HVILANPSPILCYP 266
>03_02_0260 -
6924532-6924757,6925443-6925546,6925729-6926007,
6926093-6926368,6926460-6926678,6926758-6926926,
6927208-6927382,6927489-6927600,6929566-6929820
Length = 604
Score = 27.5 bits (58), Expect = 5.3
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = +1
Query: 70 VVDNSGVPSDGHSDHVVIANPDPFFSQP 153
V++N +P H HVV+ANP P P
Sbjct: 248 VLENCQLPHANHG-HVVLANPSPILFYP 274
>09_06_0244 + 21822811-21823246,21823337-21823468,21823949-21824037,
21824135-21824224,21825033-21825603,21826097-21826734,
21826978-21827098,21827223-21827337,21828234-21829723,
21829830-21829901,21830151-21830196,21830413-21830515,
21830591-21830674,21831035-21831475,21831651-21831746,
21831896-21832045,21832131-21832274,21832414-21832527,
21832621-21832803,21832901-21832945,21833058-21833192
Length = 1764
Score = 27.1 bits (57), Expect = 7.1
Identities = 17/41 (41%), Positives = 22/41 (53%), Gaps = 3/41 (7%)
Frame = -2
Query: 312 LLVLKSLIFNEDIY---FPPRGERVVVSLGWIIGMIEIDER 199
L+V KS I +Y F PRG VV +G I+G D+R
Sbjct: 1621 LVVYKSSIHGLGLYTSEFIPRGSMVVQYVGEIVGQCVADKR 1661
>01_05_0562 - 23307526-23307875,23308149-23308452,23308543-23308647
Length = 252
Score = 27.1 bits (57), Expect = 7.1
Identities = 15/48 (31%), Positives = 17/48 (35%)
Frame = +1
Query: 130 PDPFFSQPSNGPSGNYEPISTGPAFVDFNHPNYPPKRYDNPLAPWWEV 273
P P P GP +P GP P PK P PWW +
Sbjct: 183 PGPKPKPPKPGPKPKPKPPKPGPKPKP-KPPKPGPKPKPGPPQPWWPI 229
>07_03_0866 - 22134215-22135351
Length = 378
Score = 26.6 bits (56), Expect = 9.3
Identities = 16/48 (33%), Positives = 20/48 (41%), Gaps = 4/48 (8%)
Frame = +1
Query: 133 DPFFSQPSNGPSGNYEPISTGPAFVDFNHP----NYPPKRYDNPLAPW 264
D +PS GP G + T A V+ + P PP Y APW
Sbjct: 223 DTTSDEPSPGPGGARPKVDTEMAHVEDDAPVLSRGTPPAPYVTESAPW 270
>07_03_0202 +
15131001-15131047,15131488-15131754,15131913-15131940,
15132120-15132179,15132570-15132696,15132907-15133724
Length = 448
Score = 26.6 bits (56), Expect = 9.3
Identities = 17/57 (29%), Positives = 26/57 (45%), Gaps = 4/57 (7%)
Frame = +1
Query: 58 NRVHVVDNSGVPSDGHSDHVVIANPDPFFSQPSNGP----SGNYEPISTGPAFVDFN 216
NR+HV+D + V I+ PDP +P + P S P + +F +FN
Sbjct: 19 NRLHVLDPPCPSPVAAGEKVSISAPDPISHKPVSRPKVPVSDGNAPNAISKSFFNFN 75
>02_05_0763 +
31583449-31583747,31584095-31584230,31584544-31584593,
31585586-31585852,31586481-31586708,31586873-31587011,
31587091-31587161,31587313-31587412,31588201-31588264,
31588346-31588417,31588500-31588720
Length = 548
Score = 26.6 bits (56), Expect = 9.3
Identities = 15/49 (30%), Positives = 23/49 (46%)
Frame = +1
Query: 13 HKAFVFSSSRIGMLRNRVHVVDNSGVPSDGHSDHVVIANPDPFFSQPSN 159
H F + ++G R+ H +DNS S G S H +P P Q ++
Sbjct: 459 HVVFDRENMKLGWYRSECHDLDNSTTVSLGPSQHNSPEDPLPSNEQQTS 507
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,931,960
Number of Sequences: 37544
Number of extensions: 217714
Number of successful extensions: 480
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 476
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 480
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 883560296
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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