Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_E18
         (454 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_55470| Best HMM Match : Nucleoplasmin (HMM E-Value=4.8)             27   7.3  
SB_44915| Best HMM Match : VWA (HMM E-Value=0)                         27   7.3  
SB_13376| Best HMM Match : DUF1213 (HMM E-Value=0.18)                  27   7.3  
SB_13163| Best HMM Match : VWA (HMM E-Value=2.3e-32)                   27   7.3  
SB_58396| Best HMM Match : Acetyltransf_1 (HMM E-Value=0.0096)         27   7.3  
SB_39378| Best HMM Match : VWA (HMM E-Value=0)                         27   7.3  
SB_8894| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   9.6  
SB_7134| Best HMM Match : HMG_box (HMM E-Value=2e-16)                  27   9.6  
SB_49511| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.6  

>SB_55470| Best HMM Match : Nucleoplasmin (HMM E-Value=4.8)
          Length = 230

 Score = 27.1 bits (57), Expect = 7.3
 Identities = 9/23 (39%), Positives = 16/23 (69%)
 Frame = +2

Query: 17 KLSCFLLRVLACCATEFTWWTIV 85
          ++SC L+RV+AC A  + W  ++
Sbjct: 20 RVSCVLVRVVACLACWYVWTRVL 42


>SB_44915| Best HMM Match : VWA (HMM E-Value=0)
          Length = 541

 Score = 27.1 bits (57), Expect = 7.3
 Identities = 15/27 (55%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
 Frame = +1

Query: 118 VIANPDPFFSQP-SNGPSGNYEPISTG 195
           VIA PDP  S+P +NG  G   PIS+G
Sbjct: 258 VIAEPDPCLSKPCANG--GTCSPISSG 282


>SB_13376| Best HMM Match : DUF1213 (HMM E-Value=0.18)
          Length = 1022

 Score = 27.1 bits (57), Expect = 7.3
 Identities = 9/23 (39%), Positives = 16/23 (69%)
 Frame = +2

Query: 17  KLSCFLLRVLACCATEFTWWTIV 85
           ++SC L+RV+AC A  + W  ++
Sbjct: 812 RVSCVLVRVVACLACWYVWTRVL 834


>SB_13163| Best HMM Match : VWA (HMM E-Value=2.3e-32)
          Length = 318

 Score = 27.1 bits (57), Expect = 7.3
 Identities = 15/27 (55%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
 Frame = +1

Query: 118 VIANPDPFFSQP-SNGPSGNYEPISTG 195
           VIA PDP  S+P +NG  G   PIS+G
Sbjct: 54  VIAEPDPCLSKPCANG--GTCSPISSG 78


>SB_58396| Best HMM Match : Acetyltransf_1 (HMM E-Value=0.0096)
          Length = 236

 Score = 27.1 bits (57), Expect = 7.3
 Identities = 12/30 (40%), Positives = 15/30 (50%)
 Frame = +2

Query: 2   TLFDIKLSCFLLRVLACCATEFTWWTIVVF 91
           T FD  +  FL  +L  CA    WW+  VF
Sbjct: 49  TDFDDSMPLFLNSLLFVCAFSLYWWSFWVF 78


>SB_39378| Best HMM Match : VWA (HMM E-Value=0)
          Length = 2865

 Score = 27.1 bits (57), Expect = 7.3
 Identities = 15/27 (55%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
 Frame = +1

Query: 118 VIANPDPFFSQP-SNGPSGNYEPISTG 195
           VIA PDP  S+P +NG  G   PIS+G
Sbjct: 409 VIAEPDPCLSKPCANG--GTCSPISSG 433


>SB_8894| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 162

 Score = 26.6 bits (56), Expect = 9.6
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = +1

Query: 205 VDFNHPNYPPKRYD 246
           VD NHPNY P+ Y+
Sbjct: 32  VDLNHPNYLPETYN 45


>SB_7134| Best HMM Match : HMG_box (HMM E-Value=2e-16)
          Length = 228

 Score = 26.6 bits (56), Expect = 9.6
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = +1

Query: 73  VDNSGVPSDGHSDHVVIANPDPFFSQ 150
           VD+SGV  D  S  +V A  +P FSQ
Sbjct: 161 VDSSGVAGDQRSSLLVSATLNPLFSQ 186


>SB_49511| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 157

 Score = 26.6 bits (56), Expect = 9.6
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = +1

Query: 73  VDNSGVPSDGHSDHVVIANPDPFFSQ 150
           VD+SGV  D  S  +V A  +P FSQ
Sbjct: 90  VDSSGVAGDQRSSLLVSATLNPLFSQ 115


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,463,481
Number of Sequences: 59808
Number of extensions: 245983
Number of successful extensions: 624
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 584
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 622
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 908427626
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)