Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_E18
         (454 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g15870.1 68418.m01857 glycosyl hydrolase family 81 protein si...    29   1.1  
At3g44340.1 68416.m04764 sec23/sec24 transport family protein co...    29   1.1  
At1g65670.1 68414.m07452 cytochrome P450 family protein similar ...    29   1.5  
At4g15393.1 68417.m02352 cytochrome P450 family protein similar ...    28   2.6  
At5g14540.1 68418.m01704 proline-rich family protein contains pr...    28   3.4  
At5g04540.1 68418.m00454 expressed protein                             27   4.5  
At4g26750.1 68417.m03854 hydroxyproline-rich glycoprotein family...    27   4.5  

>At5g15870.1 68418.m01857 glycosyl hydrolase family 81 protein
           similar to beta-glucan-elicitor receptor GI:1752734 from
           [Glycine max]
          Length = 745

 Score = 29.5 bits (63), Expect = 1.1
 Identities = 23/66 (34%), Positives = 36/66 (54%)
 Frame = +1

Query: 25  VFSSSRIGMLRNRVHVVDNSGVPSDGHSDHVVIANPDPFFSQPSNGPSGNYEPISTGPAF 204
           +++SS I + ++ V  + N G    G    VV+ NP+P+F    +G S +Y P+S G A 
Sbjct: 221 IYASSPINLTKDGVSSI-NCGDGFSGIIRIVVLPNPNPYFETILDGFSCSY-PVS-GDA- 276

Query: 205 VDFNHP 222
            DF  P
Sbjct: 277 -DFTKP 281


>At3g44340.1 68416.m04764 sec23/sec24 transport family protein
           contains Pfam domains PF04811: Sec23/Sec24 trunk domain,
           PF04815: Sec23/Sec24 helical domain and PF04810:
           Sec23/Sec24 zinc finger
          Length = 1096

 Score = 29.5 bits (63), Expect = 1.1
 Identities = 15/48 (31%), Positives = 22/48 (45%)
 Frame = +1

Query: 118 VIANPDPFFSQPSNGPSGNYEPISTGPAFVDFNHPNYPPKRYDNPLAP 261
           ++A P P+   P+ GP     P+S+ PA       N+P   Y  P  P
Sbjct: 245 MMAPPPPYGQPPNAGPFTGNSPLSSPPAHSIPPPTNFPGVPYGRPPMP 292


>At1g65670.1 68414.m07452 cytochrome P450 family protein similar to
           Cytochrome P450 90A1 (SP:Q42569) [Arabidopsis thaliana]
          Length = 482

 Score = 29.1 bits (62), Expect = 1.5
 Identities = 15/37 (40%), Positives = 23/37 (62%), Gaps = 3/37 (8%)
 Frame = +1

Query: 169 GNYEPISTGPAFVDFNHPNYPPKRYDNPLA--PW-WE 270
           G+Y+ I  G  F+ + + ++ PK YD+PL   PW WE
Sbjct: 360 GSYK-IPAGWIFMGYPNNHFNPKTYDDPLVFNPWRWE 395


>At4g15393.1 68417.m02352 cytochrome P450 family protein similar to
           Cytochrome P450 90C1 (ROTUNDIFOLIA3) (SP:Q9M066)
           [Arabidopsis thaliana]; contains Pfam PF00067:
           Cytochrome P450
          Length = 399

 Score = 28.3 bits (60), Expect = 2.6
 Identities = 14/37 (37%), Positives = 24/37 (64%), Gaps = 3/37 (8%)
 Frame = +1

Query: 169 GNYEPISTGPAFVDFNHPNYPPKRYDNPLA--PW-WE 270
           G+Y  I  G  F+ + + ++ P++YD+PLA  PW W+
Sbjct: 363 GDYT-IPAGWIFMGYPYVHFNPEKYDDPLAFNPWRWK 398


>At5g14540.1 68418.m01704 proline-rich family protein contains
           proline rich extensin domains, INTERPRO:IPR002965
          Length = 547

 Score = 27.9 bits (59), Expect = 3.4
 Identities = 15/43 (34%), Positives = 20/43 (46%), Gaps = 2/43 (4%)
 Frame = +1

Query: 130 PDPFFSQPSNGPSG--NYEPISTGPAFVDFNHPNYPPKRYDNP 252
           P P  S P N P    ++ P  + P+   +N P  PP  YD P
Sbjct: 357 PYPQQSYPPNPPRQPPSHPPPGSAPSQQYYNAPPTPPSMYDGP 399


>At5g04540.1 68418.m00454 expressed protein
          Length = 833

 Score = 27.5 bits (58), Expect = 4.5
 Identities = 13/25 (52%), Positives = 15/25 (60%)
 Frame = +1

Query: 187 STGPAFVDFNHPNYPPKRYDNPLAP 261
           S+G + V  N P Y P RYD PL P
Sbjct: 610 SSGTSHVHCN-PFYDPSRYDGPLLP 633


>At4g26750.1 68417.m03854 hydroxyproline-rich glycoprotein family
           protein
          Length = 421

 Score = 27.5 bits (58), Expect = 4.5
 Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
 Frame = +1

Query: 151 PSNGPSGNYEPISTGPAFVDFNHP-NYPPKRYDNP 252
           PS+ PS ++ P  TGP+   + HP ++ P   D P
Sbjct: 236 PSSYPSNDHLPPPTGPSDSPYPHPYSHQPYHQDPP 270


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,836,409
Number of Sequences: 28952
Number of extensions: 172130
Number of successful extensions: 438
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 426
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 437
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 742437000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)