Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_E16
         (621 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP8B7.09c |||karyopherin|Schizosaccharomyces pombe|chr 2|||Manual    26   5.1  
SPBC1105.01 |rrp12|SPBPB7E8.03|rRNA processing protein Rrp12|Sch...    25   6.7  
SPCC1906.02c |||CUE domain protein Cue3 |Schizosaccharomyces pom...    25   8.8  

>SPBP8B7.09c |||karyopherin|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 978

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = -1

Query: 495 NCSWHIHNLIPYTINF 448
           NCS+ ++NL PY I +
Sbjct: 323 NCSFQLYNLFPYLIRY 338


>SPBC1105.01 |rrp12|SPBPB7E8.03|rRNA processing protein
           Rrp12|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1001

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 11/36 (30%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
 Frame = -2

Query: 170 MYSLDRYIDLNFIRKTVPLYFMH-*TILTQMSDFKY 66
           ++S+D YID   +++T  +YF     ++ Q + F Y
Sbjct: 32  LHSIDNYIDSKSLQRTASVYFSALLALIKQSNGFDY 67


>SPCC1906.02c |||CUE domain protein Cue3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 581

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 13/41 (31%), Positives = 19/41 (46%)
 Frame = +1

Query: 79  DICVKIVQCIKYNGTVLRMKFKSMYLSKLYIHF*ITYICNQ 201
           D C+K   C+K  G V  M+F + +L     H     +C Q
Sbjct: 66  DRCLKTEGCLKKIGPVTVMQFLACFLLSSQNHAYAWSVCRQ 106


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,174,695
Number of Sequences: 5004
Number of extensions: 39050
Number of successful extensions: 74
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 73
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 74
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 273658928
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)