Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_E14
         (558 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAP8A3.09c |paa1||protein phosphatase regulatory subunit Paa1|S...   134   6e-33
SPAC3G9.04 |ssu72||phosphoric ester hydrolase |Schizosaccharomyc...    27   2.5  
SPBC119.07 |ppk19||serine/threonine protein kinase Ppk19|Schizos...    25   5.7  
SPAC17A5.10 |||conserved fungal protein|Schizosaccharomyces pomb...    25   7.5  
SPBC1826.01c |mot1||TATA-binding protein associated factor Mot1|...    25   7.5  

>SPAP8A3.09c |paa1||protein phosphatase regulatory subunit
           Paa1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 590

 Score =  134 bits (325), Expect = 6e-33
 Identities = 70/119 (58%), Positives = 89/119 (74%)
 Frame = +2

Query: 98  RNLVCDANHHVKSALASVIMGLNPIVGRQNTIEQLLPLFLIQLKDECPEVRLNIISYLEC 277
           + L+ D   HV++AL   I  L P +G++ T E LLP+FL  LKDE PEVRLNIIS LE 
Sbjct: 329 QELINDPAQHVRAALGMNIGALAPQLGKEKTTEYLLPMFLELLKDENPEVRLNIISKLEV 388

Query: 278 VNEVLGIQQLLQSLLPAIV*LAYDTKWRVRLAIIEHMALLAGQIGQEFFDKKLTGLCMS 454
           VN+V+GI+ L QSLLPAIV LA D +WRVRLAII+++ LLA Q+G EFF++K+  LCMS
Sbjct: 389 VNKVVGIELLSQSLLPAIVTLAEDKQWRVRLAIIDYIPLLAQQLGVEFFNEKMGNLCMS 447



 Score = 46.4 bits (105), Expect = 3e-06
 Identities = 30/107 (28%), Positives = 57/107 (53%)
 Frame = +2

Query: 98  RNLVCDANHHVKSALASVIMGLNPIVGRQNTIEQLLPLFLIQLKDECPEVRLNIISYLEC 277
           R+ V D++   +  +A+  + L  +VG     ++L+  F++ +KD   EVR  I + +  
Sbjct: 251 RSFVSDSSWRTRYMVAANFVKLAKVVGPSLIKDELIKPFVLLMKDTEQEVRRAIATQIPG 310

Query: 278 VNEVLGIQQLLQSLLPAIV*LAYDTKWRVRLAIIEHMALLAGQIGQE 418
             E+L  + +L+ ++P I  L  D    VR A+  ++  LA Q+G+E
Sbjct: 311 FCELLDKRIVLEEIIPVIQELINDPAQHVRAALGMNIGALAPQLGKE 357



 Score = 43.2 bits (97), Expect = 3e-05
 Identities = 27/111 (24%), Positives = 53/111 (47%)
 Frame = +2

Query: 104 LVCDANHHVKSALASVIMGLNPIVGRQNTIEQLLPLFLIQLKDECPEVRLNIISYLECVN 283
           L+ D    V+ A+A+ I G   ++ ++  +E+++P+    + D    VR  +   +  + 
Sbjct: 292 LMKDTEQEVRRAIATQIPGFCELLDKRIVLEEIIPVIQELINDPAQHVRAALGMNIGALA 351

Query: 284 EVLGIQQLLQSLLPAIV*LAYDTKWRVRLAIIEHMALLAGQIGQEFFDKKL 436
             LG ++  + LLP  + L  D    VRL II  + ++   +G E   + L
Sbjct: 352 PQLGKEKTTEYLLPMFLELLKDENPEVRLNIISKLEVVNKVVGIELLSQSL 402



 Score = 35.1 bits (77), Expect = 0.007
 Identities = 23/90 (25%), Positives = 39/90 (43%), Gaps = 1/90 (1%)
 Frame = +2

Query: 170 IVGRQNTIEQLLPLFLIQLKDECPEVRLNIISYLECVNEVL-GIQQLLQSLLPAIV*LAY 346
           +V +Q  I++ +PLF     D+   VRL     +  + EVL    ++   LL  +     
Sbjct: 196 LVTKQEAIDEFIPLFNSLSNDDQDSVRLLSFDIMVSLAEVLKSDSEIRHYLLQPLRSFVS 255

Query: 347 DTKWRVRLAIIEHMALLAGQIGQEFFDKKL 436
           D+ WR R  +  +   LA  +G      +L
Sbjct: 256 DSSWRTRYMVAANFVKLAKVVGPSLIKDEL 285



 Score = 29.1 bits (62), Expect = 0.46
 Identities = 12/21 (57%), Positives = 15/21 (71%)
 Frame = +3

Query: 456 WLIDHVYAIREAGTLNRLKVS 518
           WL DHVY+IREA   N  K++
Sbjct: 448 WLEDHVYSIREAAIKNLRKLT 468


>SPAC3G9.04 |ssu72||phosphoric ester hydrolase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 197

 Score = 26.6 bits (56), Expect = 2.5
 Identities = 14/52 (26%), Positives = 27/52 (51%)
 Frame = +2

Query: 179 RQNTIEQLLPLFLIQLKDECPEVRLNIISYLECVNEVLGIQQLLQSLLPAIV 334
           R  T+ + + L  + +KD   E  +   + L+ VN++   Q  L+ L P+I+
Sbjct: 127 RGETLNRPVYLINVDIKDNHEEASVGGKAILDLVNKLTEAQDKLEELFPSIM 178


>SPBC119.07 |ppk19||serine/threonine protein kinase
           Ppk19|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1706

 Score = 25.4 bits (53), Expect = 5.7
 Identities = 20/93 (21%), Positives = 44/93 (47%), Gaps = 6/93 (6%)
 Frame = +2

Query: 146 SVIMGLNPIVGRQNTIEQLLPLFLIQLKDECPEVRLN-IISYLECVNEVLGIQQL----- 307
           S++  L+  +  ++ ++ +LP  +  L+D+  +VR++ +I+    V+ V  I  +     
Sbjct: 454 SLVQILSRNICDESKLDTVLPFVMTLLRDQYADVRISALITITRLVSNVTSIAPINAFLF 513

Query: 308 LQSLLPAIV*LAYDTKWRVRLAIIEHMALLAGQ 406
            + L P +    +D   R R      + +LA Q
Sbjct: 514 QEYLFPDLQHFLFDMNSRTRATYASCLPILAKQ 546


>SPAC17A5.10 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 224

 Score = 25.0 bits (52), Expect = 7.5
 Identities = 16/49 (32%), Positives = 21/49 (42%), Gaps = 6/49 (12%)
 Frame = -1

Query: 294 PRTSFTHSK*EMMFK------RTSGHSSFNCIRNRGRSCSIVFCRPTMG 166
           PR S+ +    M +K      + SG     C R  GRS  + F RP  G
Sbjct: 131 PRISYPYPPGYMCYKCHNTGYKDSGRPCGRCARRFGRSYDVQFSRPPPG 179


>SPBC1826.01c |mot1||TATA-binding protein associated factor
           Mot1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1953

 Score = 25.0 bits (52), Expect = 7.5
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = +3

Query: 342 PMIPSGGSAWRSSSIWPY 395
           P++PS   A  S S+WP+
Sbjct: 344 PIVPSAAVAVTSDSVWPF 361


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,209,327
Number of Sequences: 5004
Number of extensions: 41867
Number of successful extensions: 96
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 89
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 95
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 233995432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)