Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0002_E14
(558 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_02_0058 - 3704138-3704257,3704355-3704421,3704502-3704641,370... 151 5e-37
04_04_1684 + 35352517-35354642,35354724-35354904,35355794-35355814 32 0.36
05_04_0050 - 17500090-17500202,17500492-17500574,17501285-175013... 29 2.5
01_07_0068 - 40861266-40861381,40861469-40861718,40861813-408619... 29 2.5
03_05_0944 + 29046793-29046922,29048091-29048464,29048556-290486... 28 4.4
03_05_0327 - 23154014-23154942,23155169-23155316,23155606-231566... 28 4.4
04_01_0413 - 5485173-5485217,5485271-5485387,5485484-5485567,548... 28 5.8
>09_02_0058 -
3704138-3704257,3704355-3704421,3704502-3704641,
3705332-3705424,3705927-3706109,3706491-3706595,
3706738-3706818,3706905-3707046,3707207-3707286,
3707456-3707568,3708051-3708297,3708659-3709051
Length = 587
Score = 151 bits (365), Expect = 5e-37
Identities = 76/118 (64%), Positives = 93/118 (78%)
Frame = +2
Query: 98 RNLVCDANHHVKSALASVIMGLNPIVGRQNTIEQLLPLFLIQLKDECPEVRLNIISYLEC 277
+ L D++ HV+SALASVIMG+ P++G++ TIEQLLP+FL LKDE P+VRLNIIS L+
Sbjct: 325 KELSSDSSQHVRSALASVIMGMAPVLGKEATIEQLLPIFLSLLKDEFPDVRLNIISKLDQ 384
Query: 278 VNEVLGIQQLLQSLLPAIV*LAYDTKWRVRLAIIEHMALLAGQIGQEFFDKKLTGLCM 451
VN+V+GI L QSLLPAIV LA D WRVRLAIIE++ LLA Q+G FFD KL LCM
Sbjct: 385 VNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCM 442
Score = 46.0 bits (104), Expect = 2e-05
Identities = 31/120 (25%), Positives = 62/120 (51%)
Frame = +2
Query: 101 NLVCDANHHVKSALASVIMGLNPIVGRQNTIEQLLPLFLIQLKDECPEVRLNIISYLECV 280
N D + V+ +A+ + L VG +++ EQL+P ++ L+D EVR+ +
Sbjct: 248 NFSQDKSWRVRYMVANQLYELCEAVGPEHSREQLVPAYVRLLRDNEAEVRIAAAGKVTKF 307
Query: 281 NEVLGIQQLLQSLLPAIV*LAYDTKWRVRLAIIEHMALLAGQIGQEFFDKKLTGLCMSVV 460
+L Q +Q +LP + L+ D+ VR A+ + +A +G+E ++L + +S++
Sbjct: 308 CRILSPQLAIQHILPCVKELSSDSSQHVRSALASVIMGMAPVLGKEATIEQLLPIFLSLL 367
Score = 36.3 bits (80), Expect = 0.017
Identities = 25/103 (24%), Positives = 46/103 (44%)
Frame = +2
Query: 128 VKSALASVIMGLNPIVGRQNTIEQLLPLFLIQLKDECPEVRLNIISYLECVNEVLGIQQL 307
V+ A AS + V + +++ +F +D+ VRL + + ++L Q
Sbjct: 179 VRRAAASNLGKFAATVEQNYLKTEVMSIFDDLTQDDQDSVRLLAVEGCAALGKLLEPQDC 238
Query: 308 LQSLLPAIV*LAYDTKWRVRLAIIEHMALLAGQIGQEFFDKKL 436
+ +LP IV + D WRVR + + L +G E ++L
Sbjct: 239 VAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEHSREQL 281
Score = 35.1 bits (77), Expect = 0.038
Identities = 30/111 (27%), Positives = 47/111 (42%)
Frame = +2
Query: 104 LVCDANHHVKSALASVIMGLNPIVGRQNTIEQLLPLFLIQLKDECPEVRLNIISYLECVN 283
L+ D V+ A A + I+ Q I+ +LP D VR + S + +
Sbjct: 288 LLRDNEAEVRIAAAGKVTKFCRILSPQLAIQHILPCVKELSSDSSQHVRSALASVIMGMA 347
Query: 284 EVLGIQQLLQSLLPAIV*LAYDTKWRVRLAIIEHMALLAGQIGQEFFDKKL 436
VLG + ++ LLP + L D VRL II + + IG + + L
Sbjct: 348 PVLGKEATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSL 398
Score = 31.5 bits (68), Expect = 0.47
Identities = 22/91 (24%), Positives = 42/91 (46%)
Frame = +2
Query: 101 NLVCDANHHVKSALASVIMGLNPIVGRQNTIEQLLPLFLIQLKDECPEVRLNIISYLECV 280
+L D V+ L ++ Q+ + +LP+ + +D+ VR + + L +
Sbjct: 209 DLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYEL 268
Query: 281 NEVLGIQQLLQSLLPAIV*LAYDTKWRVRLA 373
E +G + + L+PA V L D + VR+A
Sbjct: 269 CEAVGPEHSREQLVPAYVRLLRDNEAEVRIA 299
Score = 29.5 bits (63), Expect = 1.9
Identities = 21/75 (28%), Positives = 39/75 (52%), Gaps = 2/75 (2%)
Frame = +2
Query: 194 EQLLPLFLI--QLKDECPEVRLNIISYLECVNEVLGIQQLLQSLLPAIV*LAYDTKWRVR 367
E L P+ ++ +LK+E ++RLN I L + LG ++ + L+P + D + V
Sbjct: 6 EPLYPIAILIDELKNEDIQLRLNSIRRLSTIARALGEERTRKELIPFLS-ENNDDEDEVL 64
Query: 368 LAIIEHMALLAGQIG 412
LA+ E + + +G
Sbjct: 65 LAMAEELGVFIPYVG 79
Score = 29.1 bits (62), Expect = 2.5
Identities = 18/103 (17%), Positives = 47/103 (45%)
Frame = +2
Query: 128 VKSALASVIMGLNPIVGRQNTIEQLLPLFLIQLKDECPEVRLNIISYLECVNEVLGIQQL 307
++ A A+ + L G + ++ ++P L ++ + R+ I+ + + V+G +
Sbjct: 452 IRDAAANNLKRLAEEFGPEWAMQHIIPQVLEKINNPHYLYRMTILQAISLLAPVMGAEIT 511
Query: 308 LQSLLPAIV*LAYDTKWRVRLAIIEHMALLAGQIGQEFFDKKL 436
Q LLP ++ + D ++ + + + L + Q +K +
Sbjct: 512 CQQLLPVVINSSKDRVPNIKFNVAKVLQALIPILDQSVVEKNV 554
>04_04_1684 + 35352517-35354642,35354724-35354904,35355794-35355814
Length = 775
Score = 31.9 bits (69), Expect = 0.36
Identities = 17/47 (36%), Positives = 22/47 (46%)
Frame = +1
Query: 121 PSCQIGPRFRHYGPQPHRRTTEHNRAAPASVPDTIERRMP*GPFEHH 261
P G R+R P P R H+RA P++ +RR P P HH
Sbjct: 17 PPASSGGRYRRRSPSPRR----HHRAPPSNPNPHRDRRTPDRPRRHH 59
>05_04_0050 -
17500090-17500202,17500492-17500574,17501285-17501319,
17501403-17501504,17502371-17502443,17504904-17505000,
17505129-17505282
Length = 218
Score = 29.1 bits (62), Expect = 2.5
Identities = 10/20 (50%), Positives = 17/20 (85%)
Frame = -1
Query: 474 THDQSTTDMQRPVSFLSKNS 415
+HDQ TTD+ + V+F+++NS
Sbjct: 116 SHDQDTTDLHKCVAFITENS 135
>01_07_0068 -
40861266-40861381,40861469-40861718,40861813-40861914,
40862687-40862759,40863590-40863754,40866380-40866459,
40867565-40867630,40867764-40868123,40868388-40868648
Length = 490
Score = 29.1 bits (62), Expect = 2.5
Identities = 10/19 (52%), Positives = 16/19 (84%)
Frame = -1
Query: 474 THDQSTTDMQRPVSFLSKN 418
+HDQ TTD+ + VSF+++N
Sbjct: 343 SHDQDTTDLHKCVSFITRN 361
>03_05_0944 + 29046793-29046922,29048091-29048464,29048556-29048687,
29048829-29049210,29049370-29049513,29049593-29049777,
29049925-29050051,29050603-29050676,29051071-29051147,
29051256-29051292,29051453-29051619,29051800-29051983,
29052053-29052130,29052451-29052570,29052648-29052707,
29053057-29053179,29053848-29053941,29054019-29054197,
29054737-29055039,29055373-29055474,29055553-29055693,
29055831-29055995,29056168-29056344,29056432-29056554,
29057787-29057867,29057983-29058099,29058214-29058386,
29058846-29058923,29058994-29059141,29059755-29059877,
29060015-29060071,29060145-29060255,29060382-29060573,
29060690-29060863,29061263-29061373,29061462-29061531,
29061734-29061812,29061898-29062000,29062086-29062256,
29062348-29062470,29062548-29062661,29062935-29063041,
29063117-29063168,29063245-29063351,29063589-29063703,
29063819-29063929,29064016-29064153,29064230-29064352,
29064535-29064606,29064774-29064886,29066780-29067110,
29067199-29067381,29068669-29068863,29068943-29069110,
29069208-29069340,29069511-29069595,29069726-29069765
Length = 2591
Score = 28.3 bits (60), Expect = 4.4
Identities = 22/67 (32%), Positives = 30/67 (44%)
Frame = +2
Query: 182 QNTIEQLLPLFLIQLKDECPEVRLNIISYLECVNEVLGIQQLLQSLLPAIV*LAYDTKWR 361
QN ++ +LP L L DE VR +S E L LLPAI + WR
Sbjct: 1692 QNYLQIVLPAILDGLADENESVRDAALSAGHVFVEHYATSSL-PLLLPAIEDGIFSDNWR 1750
Query: 362 VRLAIIE 382
+R + +E
Sbjct: 1751 IRQSSVE 1757
Score = 27.9 bits (59), Expect = 5.8
Identities = 24/73 (32%), Positives = 35/73 (47%), Gaps = 2/73 (2%)
Frame = +2
Query: 197 QLLPLFLIQLKDECPEVRLNIISYLECVNEV--LGIQQLLQSLLPAIV*LAYDTKWRVRL 370
QL+ L + L+D+ EVR +S L+ ++ + L L PAI DT VR+
Sbjct: 2477 QLIQLLALALRDDSSEVRRRSLSRLKAAAKINNPALATHLSILGPAIAEALKDTNTPVRV 2536
Query: 371 AIIEHMALLAGQI 409
A E AL Q+
Sbjct: 2537 A-AERCALHVFQL 2548
>03_05_0327 -
23154014-23154942,23155169-23155316,23155606-23156622,
23156753-23157217,23160258-23161247
Length = 1182
Score = 28.3 bits (60), Expect = 4.4
Identities = 22/73 (30%), Positives = 38/73 (52%)
Frame = +2
Query: 227 KDECPEVRLNIISYLECVNEVLGIQQLLQSLLPAIV*LAYDTKWRVRLAIIEHMALLAGQ 406
KD C EVR++ I+ L + + ++L+ LLP + + D VR + ++ LLA +
Sbjct: 419 KDSCTEVRVSTINGLIYLLDNPQSHEILKVLLPRLSDMVSDPALSVRSSAVD--LLLAIR 476
Query: 407 IGQEFFDKKLTGL 445
+ F K+ GL
Sbjct: 477 DLRSFQFNKVVGL 489
>04_01_0413 -
5485173-5485217,5485271-5485387,5485484-5485567,
5485741-5486052
Length = 185
Score = 27.9 bits (59), Expect = 5.8
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = +1
Query: 160 PQPHRRTTEHNRAAPASVPDTIER 231
P+P+ RT + AA AS PDT+ +
Sbjct: 2 PKPNPRTASSSAAAAASSPDTVRK 25
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,645,358
Number of Sequences: 37544
Number of extensions: 309877
Number of successful extensions: 716
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 690
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 715
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1269546012
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -