Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_E13
         (420 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase Y|Schizosacch...    31   0.055
SPCC1235.01 ||SPCC320.02c|sequence orphan|Schizosaccharomyces po...    29   0.29 
SPBC12D12.04c |pck2|sts6, pkc1|protein kinase C |Schizosaccharom...    29   0.39 
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    28   0.51 
SPAC30D11.09 |cwf19||complexed with Cdc5 protein Cwf19 |Schizosa...    28   0.68 
SPAC6F12.12 |par2|pbp2|protein phosphatase regulatory subunit Pa...    27   0.90 
SPAC26A3.15c |nsp1||nucleoporin Nsp1|Schizosaccharomyces pombe|c...    27   0.90 
SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein Sap49|Schizo...    27   0.90 
SPAC144.13c |srw1|ste9|CDK inhibitor Srw1|Schizosaccharomyces po...    26   2.1  
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce...    26   2.7  
SPAC6G9.04 |mug79||meiotically upregulated gene Mug79|Schizosacc...    25   4.8  
SPAC1486.10 |thi1|ntf1, SPAC6G10.01|transcription factor Thi1|Sc...    24   8.4  
SPCC1742.01 ||SPCC1795.13, SPCPB16A4.07c|sequence orphan|Schizos...    24   8.4  
SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyce...    24   8.4  
SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr 2...    24   8.4  

>SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase
           Y|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1002

 Score = 31.5 bits (68), Expect = 0.055
 Identities = 12/38 (31%), Positives = 16/38 (42%)
 Frame = +2

Query: 59  HKFNSNNRHHKANSNNRHHKANSNNSLHKANSNNSLHK 172
           HK   +  HHK   +  HHK   +   HK   +   HK
Sbjct: 365 HKGPKDKEHHKGPKDKEHHKGPKDKEHHKGPKDKEHHK 402



 Score = 31.5 bits (68), Expect = 0.055
 Identities = 12/38 (31%), Positives = 16/38 (42%)
 Frame = +2

Query: 59  HKFNSNNRHHKANSNNRHHKANSNNSLHKANSNNSLHK 172
           HK   +  HHK   +  HHK   +   HK   +   HK
Sbjct: 374 HKGPKDKEHHKGPKDKEHHKGPKDKEHHKGPKDKEHHK 411



 Score = 30.3 bits (65), Expect = 0.13
 Identities = 11/38 (28%), Positives = 16/38 (42%)
 Frame = +2

Query: 59  HKFNSNNRHHKANSNNRHHKANSNNSLHKANSNNSLHK 172
           H+   +  HHK   +  HHK   +   HK   +   HK
Sbjct: 356 HRGPEDKEHHKGPKDKEHHKGPKDKEHHKGPKDKEHHK 393



 Score = 29.9 bits (64), Expect = 0.17
 Identities = 11/38 (28%), Positives = 16/38 (42%)
 Frame = +2

Query: 59  HKFNSNNRHHKANSNNRHHKANSNNSLHKANSNNSLHK 172
           HK   +  HHK   +  HHK   +   HK   +   H+
Sbjct: 383 HKGPKDKEHHKGPKDKEHHKGPKDKEHHKGPKDKEHHQ 420



 Score = 26.6 bits (56), Expect = 1.6
 Identities = 9/30 (30%), Positives = 13/30 (43%)
 Frame = +2

Query: 83  HHKANSNNRHHKANSNNSLHKANSNNSLHK 172
           HH+   +  HHK   +   HK   +   HK
Sbjct: 355 HHRGPEDKEHHKGPKDKEHHKGPKDKEHHK 384


>SPCC1235.01 ||SPCC320.02c|sequence orphan|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 658

 Score = 29.1 bits (62), Expect = 0.29
 Identities = 12/30 (40%), Positives = 20/30 (66%)
 Frame = +2

Query: 65  FNSNNRHHKANSNNRHHKANSNNSLHKANS 154
           +N+NN  +  N+NN+++  N+NNS    NS
Sbjct: 613 YNNNNNQNYGNNNNQNYN-NNNNSSQGGNS 641



 Score = 27.9 bits (59), Expect = 0.68
 Identities = 12/32 (37%), Positives = 21/32 (65%)
 Frame = +2

Query: 68  NSNNRHHKANSNNRHHKANSNNSLHKANSNNS 163
           NSN +++  N+NN  +  N+NN  +  N+N+S
Sbjct: 607 NSNKQNY--NNNNNQNYGNNNNQNYNNNNNSS 636



 Score = 25.8 bits (54), Expect = 2.7
 Identities = 10/32 (31%), Positives = 20/32 (62%)
 Frame = +2

Query: 71  SNNRHHKANSNNRHHKANSNNSLHKANSNNSL 166
           +NN ++ +NS N ++  + NN+     S++SL
Sbjct: 562 NNNNNNNSNSGNYNNNNSGNNNQQHQQSSSSL 593



 Score = 25.4 bits (53), Expect = 3.6
 Identities = 8/31 (25%), Positives = 20/31 (64%)
 Frame = +2

Query: 68  NSNNRHHKANSNNRHHKANSNNSLHKANSNN 160
           N+NN ++  + N  ++ + +NN  H+ +S++
Sbjct: 562 NNNNNNNSNSGNYNNNNSGNNNQQHQQSSSS 592



 Score = 25.4 bits (53), Expect = 3.6
 Identities = 10/32 (31%), Positives = 19/32 (59%)
 Frame = +2

Query: 68  NSNNRHHKANSNNRHHKANSNNSLHKANSNNS 163
           +S+   +K N NN +++   NN+    N+NN+
Sbjct: 603 SSSGNSNKQNYNNNNNQNYGNNNNQNYNNNNN 634


>SPBC12D12.04c |pck2|sts6, pkc1|protein kinase C
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1016

 Score = 28.7 bits (61), Expect = 0.39
 Identities = 16/40 (40%), Positives = 24/40 (60%)
 Frame = +2

Query: 47  KAKPHKFNSNNRHHKANSNNRHHKANSNNSLHKANSNNSL 166
           KA+ HK  S+  HHK   ++ H K+ S++S HK N   S+
Sbjct: 544 KAQQHKQKSS--HHK---HHHHKKSKSSSSKHKENDKASV 578


>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 28.3 bits (60), Expect = 0.51
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = +3

Query: 270 TITTGSSKSIPTATTSMAIPTTVTSNSIP 356
           +I TG S S+ T  T    PT+ +S SIP
Sbjct: 234 SIPTGGSSSLSTPITPTVPPTSTSSTSIP 262



 Score = 26.6 bits (56), Expect = 1.6
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = +3

Query: 279 TGSSKSIPTATTSMAIPTTVTSNSIP 356
           TG S S+ T  T    PT+ +S SIP
Sbjct: 124 TGGSSSLSTPITPTVPPTSTSSTSIP 149



 Score = 26.6 bits (56), Expect = 1.6
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = +3

Query: 279 TGSSKSIPTATTSMAIPTTVTSNSIP 356
           TG S S+ T  T    PT+ +S SIP
Sbjct: 181 TGGSSSLSTPITPTVPPTSTSSTSIP 206



 Score = 24.6 bits (51), Expect = 6.3
 Identities = 13/47 (27%), Positives = 22/47 (46%)
 Frame = +3

Query: 273 ITTGSSKSIPTATTSMAIPTTVTSNSIPGTAACSTTIAKARYPPIVS 413
           IT+ S  SIP  +T +   +T +   I   +  S + + + Y P  S
Sbjct: 707 ITSSSLSSIPNNSTEVKTASTSSGTEIKTASTSSGSSSSSSYTPASS 753


>SPAC30D11.09 |cwf19||complexed with Cdc5 protein Cwf19
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 639

 Score = 27.9 bits (59), Expect = 0.68
 Identities = 10/32 (31%), Positives = 15/32 (46%)
 Frame = +2

Query: 47  KAKPHKFNSNNRHHKANSNNRHHKANSNNSLH 142
           +   HKFN  +R    +  +RHH +    S H
Sbjct: 9   RTSTHKFNETDRETNHSRRHRHHHSRHRESKH 40


>SPAC6F12.12 |par2|pbp2|protein phosphatase regulatory subunit
           Par2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 627

 Score = 27.5 bits (58), Expect = 0.90
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = +2

Query: 74  NNRHHKANSNNRHHKANSNNSLH 142
           + R+H ANSNN  H+ NS+  +H
Sbjct: 70  HKRNHHANSNNEKHE-NSDKKIH 91



 Score = 27.1 bits (57), Expect = 1.2
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = +2

Query: 101 NNRHHKANSNNSLHKANSNNSLH 169
           + R+H ANSNN  H+ NS+  +H
Sbjct: 70  HKRNHHANSNNEKHE-NSDKKIH 91


>SPAC26A3.15c |nsp1||nucleoporin Nsp1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 598

 Score = 27.5 bits (58), Expect = 0.90
 Identities = 15/42 (35%), Positives = 22/42 (52%)
 Frame = +3

Query: 264 PNTITTGSSKSIPTATTSMAIPTTVTSNSIPGTAACSTTIAK 389
           P++  TG++ S P A+ + + PTT  S   P   A ST   K
Sbjct: 245 PSSSITGTNDSKPAASNTGSAPTTGFSFGKPAGQAASTATDK 286


>SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein
           Sap49|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 335

 Score = 27.5 bits (58), Expect = 0.90
 Identities = 13/47 (27%), Positives = 21/47 (44%)
 Frame = +3

Query: 267 NTITTGSSKSIPTATTSMAIPTTVTSNSIPGTAACSTTIAKARYPPI 407
           +T+  G S + P  T++   P T+ + SIP         A    PP+
Sbjct: 208 STLPPGFSPATPAPTSAANTPATIAATSIPPVPNVPLVGATTAVPPL 254


>SPAC144.13c |srw1|ste9|CDK inhibitor Srw1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 556

 Score = 26.2 bits (55), Expect = 2.1
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = +2

Query: 89  KANSNNRHHKANSNNSLHKANSNNS 163
           +  S+N     NSNNS+++  +NNS
Sbjct: 9   RPTSSNSSANRNSNNSMNRVENNNS 33


>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1036

 Score = 25.8 bits (54), Expect = 2.7
 Identities = 16/43 (37%), Positives = 24/43 (55%)
 Frame = +3

Query: 270 TITTGSSKSIPTATTSMAIPTTVTSNSIPGTAACSTTIAKARY 398
           T  T +S SI ++T S + P T +SNS     + S T + A+Y
Sbjct: 236 TSATATSSSI-SSTVSSSTPLT-SSNSTTAATSASATSSSAQY 276



 Score = 25.4 bits (53), Expect = 3.6
 Identities = 14/43 (32%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
 Frame = +3

Query: 267 NTITTGSSKSIPTATTSMAIPTT-VTSNSIPGTAACSTTIAKA 392
           ++ T+ S  S  T +T+ A PT+  TS+S+  TAA ++  + +
Sbjct: 152 SSTTSSSLASSSTNSTTSATPTSSATSSSLSSTAASNSATSSS 194


>SPAC6G9.04 |mug79||meiotically upregulated gene
           Mug79|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1318

 Score = 25.0 bits (52), Expect = 4.8
 Identities = 12/32 (37%), Positives = 15/32 (46%)
 Frame = +2

Query: 56  PHKFNSNNRHHKANSNNRHHKANSNNSLHKAN 151
           PH    N   HK NS  +  K N+ N L  A+
Sbjct: 455 PHPRTLNATEHKINSRIQVSKLNTKNELANAD 486


>SPAC1486.10 |thi1|ntf1, SPAC6G10.01|transcription factor
           Thi1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 775

 Score = 24.2 bits (50), Expect = 8.4
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = +3

Query: 270 TITTGSSKSIPTATTSMAIPTTVTSNSIPGT 362
           ++TTG   SIP    S+  P  +    IPG+
Sbjct: 410 SMTTGRRPSIPLECISIPYPVILPDLEIPGS 440


>SPCC1742.01 ||SPCC1795.13, SPCPB16A4.07c|sequence
           orphan|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1563

 Score = 24.2 bits (50), Expect = 8.4
 Identities = 10/36 (27%), Positives = 20/36 (55%)
 Frame = +3

Query: 276 TTGSSKSIPTATTSMAIPTTVTSNSIPGTAACSTTI 383
           +T +S   PT    + +PTT T+ ++    + +TT+
Sbjct: 183 STSTSCPPPTTILIVTVPTTTTTTTVGYPGSVTTTL 218


>SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 217

 Score = 24.2 bits (50), Expect = 8.4
 Identities = 7/17 (41%), Positives = 13/17 (76%)
 Frame = +2

Query: 68  NSNNRHHKANSNNRHHK 118
           N ++RHH+ +S +R H+
Sbjct: 197 NRHSRHHRRHSRSRRHR 213


>SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1217

 Score = 24.2 bits (50), Expect = 8.4
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = +3

Query: 264  PNTITTGSSKSIPTATTSMAIPTTVTS 344
            P T TT + K   T + S   P+TVTS
Sbjct: 1043 PVTSTTTTIKQATTVSASKPAPSTVTS 1069


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.275    0.102    0.280 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 578,701
Number of Sequences: 5004
Number of extensions: 6817
Number of successful extensions: 46
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 42
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 148351622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 18 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 47 (21.9 bits)