Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0002_E13
(420 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0752 - 6798938-6799312,6799628-6799768,6800257-6800325,680... 30 0.66
11_03_0161 - 10949552-10950925 28 2.7
08_01_0539 + 4679392-4681282,4682060-4682104,4682403-4683560,468... 28 2.7
04_03_1002 - 21617339-21617362,21618476-21618565,21618755-216194... 28 2.7
12_02_0693 - 22207582-22207620,22208421-22208597,22209258-222093... 28 3.5
08_02_0270 + 15108178-15108587,15108678-15108774,15109445-151094... 27 4.6
08_01_0535 - 4638954-4639127,4639894-4639944,4640287-4640352,464... 27 4.6
02_01_0292 + 1949926-1950037,1950121-1950250,1950551-1950616,195... 27 4.6
07_03_1765 - 29329350-29331290,29331705-29331827,29332205-29333026 27 6.1
06_01_1132 + 9346372-9346429,9347314-9348179,9348817-9349176 27 8.1
>12_01_0752 -
6798938-6799312,6799628-6799768,6800257-6800325,
6800407-6800454,6801740-6801836,6801922-6802001,
6802099-6802170,6802335-6802429,6802853-6802934,
6805476-6805853
Length = 478
Score = 30.3 bits (65), Expect = 0.66
Identities = 10/37 (27%), Positives = 21/37 (56%)
Frame = +2
Query: 59 HKFNSNNRHHKANSNNRHHKANSNNSLHKANSNNSLH 169
H+ N+N+ +++ N +HH ++NN H+ + H
Sbjct: 383 HQHNNNHFNNQNYHNGQHHNHHANNHHHQGGNRGGAH 419
>11_03_0161 - 10949552-10950925
Length = 457
Score = 28.3 bits (60), Expect = 2.7
Identities = 17/44 (38%), Positives = 23/44 (52%), Gaps = 3/44 (6%)
Frame = +3
Query: 288 SKSIPTATTSMAIPTTVTSNSIP---GTAACSTTIAKARYPPIV 410
S + ATTS A P TVT +P +AA +TT + P+V
Sbjct: 20 SGPVTAATTSAASPVTVTLGDLPQQKRSAATATTTTSSGGSPVV 63
>08_01_0539 +
4679392-4681282,4682060-4682104,4682403-4683560,
4683834-4684204,4684290-4684835,4684927-4685027,
4685117-4685933,4686025-4686213,4686313-4686384,
4686477-4686587,4686647-4686652,4686694-4686794,
4687714-4687813,4687891-4687986,4688157-4688273,
4688367-4688492,4688566-4688619,4688745-4688992,
4689087-4689195,4689284-4689583,4689799-4689963
Length = 2240
Score = 28.3 bits (60), Expect = 2.7
Identities = 11/35 (31%), Positives = 17/35 (48%)
Frame = +2
Query: 59 HKFNSNNRHHKANSNNRHHKANSNNSLHKANSNNS 163
H SNN H ++S+ +HH L ++NS
Sbjct: 41 HHTTSNNHHSHSHSHRKHHAELEEGELLNGEADNS 75
>04_03_1002 -
21617339-21617362,21618476-21618565,21618755-21619432,
21619536-21619772,21619849-21619896,21619995-21620045,
21620301-21620426,21620557-21620697,21621165-21621401,
21622467-21622571,21622812-21622982,21623306-21623380,
21623754-21623936,21624151-21624297,21624365-21624472,
21624605-21624709,21625109-21625213,21625322-21625381,
21625512-21625579,21625876-21625954,21626208-21626267,
21626445-21626498,21626834-21626886,21627405-21627494,
21628265-21628362,21628464-21628852
Length = 1193
Score = 28.3 bits (60), Expect = 2.7
Identities = 13/51 (25%), Positives = 27/51 (52%)
Frame = +3
Query: 261 KPNTITTGSSKSIPTATTSMAIPTTVTSNSIPGTAACSTTIAKARYPPIVS 413
+P T ++ S+ PT ++ +T S+ P T + +++ A R PP+ +
Sbjct: 60 RPTTPSSSSAGGRPTTPSAAFARSTTPSSGRPTTPSSASSRAAGRAPPVAA 110
>12_02_0693 -
22207582-22207620,22208421-22208597,22209258-22209347,
22210215-22210280,22210473-22210570,22210669-22210789,
22210875-22212477,22213332-22213915
Length = 925
Score = 27.9 bits (59), Expect = 3.5
Identities = 12/34 (35%), Positives = 20/34 (58%), Gaps = 4/34 (11%)
Frame = +2
Query: 47 KAKPH----KFNSNNRHHKANSNNRHHKANSNNS 136
K KPH K +N ++N N+ HH+++SN +
Sbjct: 396 KQKPHGSQAKRKDDNYPRRSNQNHNHHRSSSNQA 429
>08_02_0270 + 15108178-15108587,15108678-15108774,15109445-15109492,
15109583-15109806,15111367-15111463,15111556-15111651,
15112297-15112544,15112632-15112715,15112787-15113236,
15114880-15115024,15115116-15115217,15115677-15115769,
15117308-15117349,15119085-15119113,15119210-15119251,
15119922-15119997,15120764-15120835,15121208-15121326,
15121428-15121491,15121576-15123009
Length = 1323
Score = 27.5 bits (58), Expect = 4.6
Identities = 12/34 (35%), Positives = 21/34 (61%)
Frame = +2
Query: 71 SNNRHHKANSNNRHHKANSNNSLHKANSNNSLHK 172
SN+ + S+ H+A+S+ S+ ++S N LHK
Sbjct: 996 SNSSRDRRKSDKTGHEADSDMSILPSDSRNFLHK 1029
>08_01_0535 -
4638954-4639127,4639894-4639944,4640287-4640352,
4640492-4640557,4640701-4640892,4641282-4641780,
4642009-4642364
Length = 467
Score = 27.5 bits (58), Expect = 4.6
Identities = 11/33 (33%), Positives = 21/33 (63%)
Frame = +2
Query: 68 NSNNRHHKANSNNRHHKANSNNSLHKANSNNSL 166
+S N HH +N+ HH+ N+ + + ++SNN +
Sbjct: 130 SSRNDHH---TNHHHHQINTPSLMSNSSSNNGV 159
>02_01_0292 +
1949926-1950037,1950121-1950250,1950551-1950616,
1950718-1950789,1951198-1951607,1951789-1951994,
1952121-1952407,1952527-1952665,1952746-1953141
Length = 605
Score = 27.5 bits (58), Expect = 4.6
Identities = 14/47 (29%), Positives = 23/47 (48%)
Frame = +3
Query: 267 NTITTGSSKSIPTATTSMAIPTTVTSNSIPGTAACSTTIAKARYPPI 407
+T+ G+ +IPT S P T+ + AA + + A +PPI
Sbjct: 125 STLRNGNHLTIPTMPGSSPTPDTIPGSPPTPAAAVAAPRSGASHPPI 171
>07_03_1765 - 29329350-29331290,29331705-29331827,29332205-29333026
Length = 961
Score = 27.1 bits (57), Expect = 6.1
Identities = 12/25 (48%), Positives = 18/25 (72%)
Frame = +3
Query: 276 TTGSSKSIPTATTSMAIPTTVTSNS 350
++G+SKS P+ TTS A T +S+S
Sbjct: 115 SSGNSKSTPSTTTSSAADATSSSSS 139
>06_01_1132 + 9346372-9346429,9347314-9348179,9348817-9349176
Length = 427
Score = 26.6 bits (56), Expect = 8.1
Identities = 9/23 (39%), Positives = 17/23 (73%)
Frame = +2
Query: 68 NSNNRHHKANSNNRHHKANSNNS 136
N+NN ++ N NN ++ +NS+N+
Sbjct: 185 NNNNNNNNDNDNNDNNNSNSSNN 207
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.275 0.102 0.280
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,740,070
Number of Sequences: 37544
Number of extensions: 40256
Number of successful extensions: 67
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 60
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 65
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 766563072
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 18 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 47 (21.9 bits)
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