Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_E12
         (276 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1442.04c |||conserved fungal protein|Schizosaccharomyces pom...    23   6.1  
SPBC21C3.20c |git1||C2 domain protein Git1|Schizosaccharomyces p...    23   6.1  
SPBC16C6.06 |pep1|vps10|sorting receptor for CPY|Schizosaccharom...    23   6.1  
SPAC11H11.01 |sst6|cps23|ESCRT I complex subunit Vps23|Schizosac...    23   8.0  
SPCC1393.05 |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    23   8.0  

>SPCC1442.04c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 409

 Score = 23.4 bits (48), Expect = 6.1
 Identities = 13/40 (32%), Positives = 19/40 (47%)
 Frame = +3

Query: 156 DLCEAFHKYLMDLSFEEKLVVLKLHPDLAGTLAAQGETNS 275
           DL EAF++ L D   EE +  +   PDL      +   N+
Sbjct: 33  DLDEAFNQMLHDGKVEEVVEAINGSPDLLSESDVENAKNN 72


>SPBC21C3.20c |git1||C2 domain protein Git1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1098

 Score = 23.4 bits (48), Expect = 6.1
 Identities = 7/13 (53%), Positives = 12/13 (92%)
 Frame = -2

Query: 74  FKLMTTKVVHFRD 36
           +K++T KV+HF+D
Sbjct: 772 YKILTEKVMHFKD 784


>SPBC16C6.06 |pep1|vps10|sorting receptor for
           CPY|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1466

 Score = 23.4 bits (48), Expect = 6.1
 Identities = 9/11 (81%), Positives = 9/11 (81%)
 Frame = +2

Query: 17  HVFTNNHLGSE 49
           HV TN HLGSE
Sbjct: 966 HVTTNTHLGSE 976


>SPAC11H11.01 |sst6|cps23|ESCRT I complex subunit
           Vps23|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 487

 Score = 23.0 bits (47), Expect = 8.0
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = -3

Query: 61  PPKLFTSEMVICKDMPNFYD 2
           PPK   +E++I KD P+  D
Sbjct: 256 PPKPEQNEIIITKDTPSLKD 275


>SPCC1393.05 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 956

 Score = 23.0 bits (47), Expect = 8.0
 Identities = 8/21 (38%), Positives = 14/21 (66%)
 Frame = +1

Query: 118 YKFGTRSLFQMRLICVKHFIN 180
           Y  G+  LFQ +++C + +IN
Sbjct: 595 YGVGSLYLFQPKIVCSEKYIN 615


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,167,055
Number of Sequences: 5004
Number of extensions: 20807
Number of successful extensions: 57
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 57
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 57
length of database: 2,362,478
effective HSP length: 61
effective length of database: 2,057,234
effective search space used: 61717020
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)