Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0002_E12
(276 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0764 + 10990220-10992410,10992809-10993616,10994734-109949... 28 1.2
10_08_0663 - 19666476-19667017,19667664-19667755,19668039-196680... 27 1.6
11_01_0694 - 5719188-5720400,5720439-5721194,5722004-5722247,572... 27 2.1
09_02_0048 - 3532663-3533475,3534086-3534589,3534715-3535740,353... 27 2.8
07_01_0174 - 1227871-1228043,1228303-1228423,1228519-1228588,122... 27 2.8
10_02_0160 - 6033956-6034140,6034327-6034594,6035739-6036107,603... 26 3.7
11_05_0100 - 19056465-19056470,19057043-19057276,19058391-190585... 26 5.0
07_01_0614 - 4545306-4545833 26 5.0
04_04_1131 + 31123376-31123432,31124514-31124756,31125386-31126399 26 5.0
03_05_1154 + 30803983-30806047,30806152-30806968,30807362-308076... 25 6.5
04_02_0004 - 8430902-8431210,8431295-8431445,8431542-8431830,843... 25 8.7
03_02_0993 - 13058785-13059025,13059188-13059264,13062157-130623... 25 8.7
>03_02_0764 +
10990220-10992410,10992809-10993616,10994734-10994968,
10995028-10995169,10997365-10997444,10997636-10997776
Length = 1198
Score = 27.9 bits (59), Expect = 1.2
Identities = 11/46 (23%), Positives = 25/46 (54%)
Frame = +3
Query: 138 PFSNASDLCEAFHKYLMDLSFEEKLVVLKLHPDLAGTLAAQGETNS 275
P + LC+ +Y+ +L+ ++++V + H D G + A+ N+
Sbjct: 256 PGGDVKLLCDTVVEYVRELTGYDRVMVYRFHEDEHGEVVAESRRNN 301
>10_08_0663 -
19666476-19667017,19667664-19667755,19668039-19668095,
19668304-19668447,19668567-19668613,19668733-19668791,
19668975-19669045,19669274-19669341,19669431-19669598,
19669885-19669944,19670075-19670251
Length = 494
Score = 27.5 bits (58), Expect = 1.6
Identities = 17/44 (38%), Positives = 25/44 (56%)
Frame = +3
Query: 30 ITISEVNNFGGHQFKRMFGNVVELCSDAAVQVWNKKPFSNASDL 161
+++SE+ +F F R+FG V E C DA + W S+AS L
Sbjct: 88 LSLSELEHFVDI-FLRLFGMVDEDCVDARMPAWPLGGGSDASAL 130
>11_01_0694 -
5719188-5720400,5720439-5721194,5722004-5722247,
5723862-5723901
Length = 750
Score = 27.1 bits (57), Expect = 2.1
Identities = 16/47 (34%), Positives = 22/47 (46%), Gaps = 2/47 (4%)
Frame = -1
Query: 150 HLKKASCSKLVLLRPSII--LQHCQTSV*TDDHQSCSLPRWLFVKTC 16
HL C L P II L ++ + D+ ++ LPRWL TC
Sbjct: 501 HLHIDGCGDLSSASPEIIRALSSLKSLILEDNEKAEGLPRWLGELTC 547
>09_02_0048 -
3532663-3533475,3534086-3534589,3534715-3535740,
3536083-3536226,3536974-3537375,3537499-3537721,
3537830-3542368,3542480-3542599,3543005-3543038,
3543922-3544102,3544198-3544815,3545022-3551098,
3551139-3551304,3551508-3551614,3552056-3552178,
3553417-3553642
Length = 5100
Score = 26.6 bits (56), Expect = 2.8
Identities = 13/50 (26%), Positives = 24/50 (48%)
Frame = +3
Query: 27 QITISEVNNFGGHQFKRMFGNVVELCSDAAVQVWNKKPFSNASDLCEAFH 176
Q+T+SE+ + H+ + +FGN+ V ++P S S + H
Sbjct: 537 QVTLSELESVASHEEEALFGNLFAEARSTGVADSVEQPISLGSGPSSSQH 586
>07_01_0174 -
1227871-1228043,1228303-1228423,1228519-1228588,
1228877-1228953,1229215-1229393,1229558-1229684,
1229849-1229861,1230351-1230378,1230426-1230516,
1230870-1230956,1231239-1231276,1231426-1231464,
1231553-1231699,1231899-1231958,1232033-1232111,
1232429-1232517,1232906-1232967,1233238-1233427,
1233929-1234068,1235813-1236147,1237086-1237133
Length = 730
Score = 26.6 bits (56), Expect = 2.8
Identities = 23/67 (34%), Positives = 31/67 (46%), Gaps = 3/67 (4%)
Frame = +3
Query: 84 GNVVELCSDAAVQVW--NKKPFSNASDLCEAFHKYLMDLSFEEKLV-VLKLHPDLAGTLA 254
G++V CSD V++W + F + +L AF + K V LKL DL G A
Sbjct: 197 GDIVTACSDGIVRIWTTDNNRFCSDEELA-AFTDLISQYILSRKTVGGLKL-SDLPGIEA 254
Query: 255 AQGETNS 275
Q NS
Sbjct: 255 LQVPGNS 261
>10_02_0160 -
6033956-6034140,6034327-6034594,6035739-6036107,
6036787-6037499,6038289-6038493,6038721-6038933
Length = 650
Score = 26.2 bits (55), Expect = 3.7
Identities = 11/26 (42%), Positives = 13/26 (50%)
Frame = -3
Query: 274 ELVSPCAANVPAKSGCNFNTTNFSSK 197
E +P A NVP + N TNF K
Sbjct: 8 EFAAPSAENVPVRPQINLGDTNFDLK 33
>11_05_0100 -
19056465-19056470,19057043-19057276,19058391-19058546,
19059639-19059763,19059912-19059983,19060080-19060184,
19060691-19060745,19061576-19061656,19062806-19062869,
19064715-19064782,19064947-19065033,19066121-19066285,
19066310-19066429,19066485-19066607,19066738-19067019,
19067936-19068075,19068234-19068335,19068802-19068874,
19069061-19069171
Length = 722
Score = 25.8 bits (54), Expect = 5.0
Identities = 9/29 (31%), Positives = 15/29 (51%)
Frame = +3
Query: 63 HQFKRMFGNVVELCSDAAVQVWNKKPFSN 149
H F + + +L SD +VW +P +N
Sbjct: 167 HAFSKKHQTLFQLSSDLVDEVWKDRPLAN 195
>07_01_0614 - 4545306-4545833
Length = 175
Score = 25.8 bits (54), Expect = 5.0
Identities = 8/16 (50%), Positives = 12/16 (75%)
Frame = +3
Query: 126 WNKKPFSNASDLCEAF 173
W+++PFS DLC+ F
Sbjct: 120 WDRQPFSALRDLCDPF 135
>04_04_1131 + 31123376-31123432,31124514-31124756,31125386-31126399
Length = 437
Score = 25.8 bits (54), Expect = 5.0
Identities = 11/32 (34%), Positives = 20/32 (62%)
Frame = +3
Query: 24 LQITISEVNNFGGHQFKRMFGNVVELCSDAAV 119
+Q +++ + F GH + + GN V + +DAAV
Sbjct: 393 VQYSLAAGDAFPGHALRNVSGNRVVIATDAAV 424
>03_05_1154 +
30803983-30806047,30806152-30806968,30807362-30807655,
30808214-30808451
Length = 1137
Score = 25.4 bits (53), Expect = 6.5
Identities = 11/41 (26%), Positives = 22/41 (53%)
Frame = +3
Query: 138 PFSNASDLCEAFHKYLMDLSFEEKLVVLKLHPDLAGTLAAQ 260
P N S LC+ + + +L+ ++++ K H D G + A+
Sbjct: 214 PSGNLSLLCDVLVREVSELTGYDRVMAYKFHEDEHGEVIAE 254
>04_02_0004 -
8430902-8431210,8431295-8431445,8431542-8431830,
8431873-8432083,8432184-8432380,8432454-8432555,
8432666-8433998
Length = 863
Score = 25.0 bits (52), Expect = 8.7
Identities = 16/52 (30%), Positives = 24/52 (46%)
Frame = -1
Query: 258 ALPMFPLNRGVTSIRLIFLQN*GPLNIYEMLHTDQTHLKKASCSKLVLLRPS 103
AL F L + + + N P++ Y + T +KK+S KLVL S
Sbjct: 44 ALGFFSLTNSTSDLYVGVWYNQIPVHTYVWVANRNTPIKKSSSVKLVLTNDS 95
>03_02_0993 -
13058785-13059025,13059188-13059264,13062157-13062351,
13062650-13062811,13062915-13063044,13063082-13063149,
13063244-13063291,13063383-13063448,13063739-13063818,
13064644-13064737
Length = 386
Score = 25.0 bits (52), Expect = 8.7
Identities = 9/14 (64%), Positives = 11/14 (78%)
Frame = +2
Query: 77 DVWQCCRIMLGRSS 118
D W CRI+LGRS+
Sbjct: 330 DDWSTCRIVLGRSA 343
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,234,058
Number of Sequences: 37544
Number of extensions: 124394
Number of successful extensions: 259
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 258
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 259
length of database: 14,793,348
effective HSP length: 69
effective length of database: 12,202,812
effective search space used: 268461864
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -