Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_E12
         (276 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_21142| Best HMM Match : Endonuclease_NS (HMM E-Value=0)             29   0.44 
SB_26982| Best HMM Match : 7tm_1 (HMM E-Value=9.94922e-44)             29   0.77 
SB_45209| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   1.3  
SB_18635| Best HMM Match : 7tm_1 (HMM E-Value=8.54792e-44)             27   1.8  
SB_27056| Best HMM Match : DUF615 (HMM E-Value=2.4)                    27   1.8  
SB_38437| Best HMM Match : VWA (HMM E-Value=0)                         26   4.1  
SB_52576| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   5.4  
SB_23114| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   5.4  
SB_24442| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   7.2  

>SB_21142| Best HMM Match : Endonuclease_NS (HMM E-Value=0)
          Length = 387

 Score = 29.5 bits (63), Expect = 0.44
 Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
 Frame = +3

Query: 87  NVVELCSDAAVQVWNKKPFSNASDLCEAFHKYLMDLSFEEKLVVL-KLHPDLA 242
           ++ +L  D+ +  + + P   A DLCE     LM   F EK++   KLH  L+
Sbjct: 287 SIEKLSKDSGLVFFPQFPQGKAEDLCEVDGCKLMSQGFMEKIIFCRKLHNSLS 339


>SB_26982| Best HMM Match : 7tm_1 (HMM E-Value=9.94922e-44)
          Length = 382

 Score = 28.7 bits (61), Expect = 0.77
 Identities = 15/30 (50%), Positives = 19/30 (63%)
 Frame = -1

Query: 249 MFPLNRGVTSIRLIFLQN*GPLNIYEMLHT 160
           MF +N  VT + LIF     PLNIY++L T
Sbjct: 44  MFIMNLAVTDLTLIFFI---PLNIYDLLRT 70


>SB_45209| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 995

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 16/51 (31%), Positives = 24/51 (47%)
 Frame = -3

Query: 226 NFNTTNFSSKLRSIKYL*NASHRSDAFEKGFLFQTCTAASEHNSTTLPNIR 74
           ++ T   SS  RS +++  +SHR   +   F    CT   E+NS T    R
Sbjct: 677 SYQTGGKSSAQRSKRFI--SSHRWPPYNPSFYVNLCTVNHENNSCTFRKSR 725


>SB_18635| Best HMM Match : 7tm_1 (HMM E-Value=8.54792e-44)
          Length = 350

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 15/36 (41%), Positives = 20/36 (55%)
 Frame = +3

Query: 24  LQITISEVNNFGGHQFKRMFGNVVELCSDAAVQVWN 131
           L+IT  + N  GG  F  +FG V  LC  A+  +WN
Sbjct: 88  LRITNDKWNFPGGQGFAMIFGTVDMLCGTAS--IWN 121


>SB_27056| Best HMM Match : DUF615 (HMM E-Value=2.4)
          Length = 308

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 14/39 (35%), Positives = 16/39 (41%)
 Frame = +3

Query: 96  ELCSDAAVQVWNKKPFSNASDLCEAFHKYLMDLSFEEKL 212
           ELCSD A   W K+      D     HK  M    E +L
Sbjct: 121 ELCSDRAYNDWGKRDLKLYIDAAWIIHKTYMQEVLERQL 159


>SB_38437| Best HMM Match : VWA (HMM E-Value=0)
          Length = 3445

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +1

Query: 97   NYARTQQYKFGTRSLFQMRLICVKHF 174
            NY     YK G R +F+ R+ CV+ F
Sbjct: 2620 NYPAVTGYKVGDRRIFRGRVSCVQIF 2645


>SB_52576| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1649

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
 Frame = +3

Query: 105  SDAAVQVWNKKPFSNASDLCEAFHKY-LMDLSFEEK 209
            +D  + +WN  PFS    L E  H+Y +  L+F E+
Sbjct: 1062 NDCVINIWNLAPFSRKLSLKE--HEYPVQALAFAEE 1095


>SB_23114| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 286

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
 Frame = +2

Query: 26  TNNHLGSEQLWWSSV*TDVWQCCRIMLGRSS-TSLEQEAF 142
           TNN LG  +L  S      W C  I++G +S T+L   +F
Sbjct: 85  TNNQLGDVKLVLSDQVYTFWSCMDILVGTASITNLVAVSF 124


>SB_24442| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 673

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 14/31 (45%), Positives = 17/31 (54%), Gaps = 3/31 (9%)
 Frame = -3

Query: 166 SHRSDAFE---KGFLFQTCTAASEHNSTTLP 83
           S R + FE   K  +F+TCT  SE  S  LP
Sbjct: 165 SERKELFEITPKEKVFKTCTVLSEKKSRKLP 195


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,595,675
Number of Sequences: 59808
Number of extensions: 156601
Number of successful extensions: 367
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 355
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 367
length of database: 16,821,457
effective HSP length: 68
effective length of database: 12,754,513
effective search space used: 293353799
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)