Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_E12
         (276 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC078655-1|AAH78655.1|  871|Homo sapiens Src homology 3 domain-c...    32   0.37 
AY552599-1|AAS59842.1|  871|Homo sapiens SH3-containing guanine ...    32   0.37 
AF415175-1|AAL27001.1|  871|Homo sapiens putative SH3 domain-con...    32   0.37 
AK022884-1|BAB14292.1|  408|Homo sapiens protein ( Homo sapiens ...    30   1.5  

>BC078655-1|AAH78655.1|  871|Homo sapiens Src homology 3
           domain-containing guanine nucleotide exchange factor
           protein.
          Length = 871

 Score = 31.9 bits (69), Expect = 0.37
 Identities = 17/40 (42%), Positives = 23/40 (57%)
 Frame = +3

Query: 75  RMFGNVVELCSDAAVQVWNKKPFSNASDLCEAFHKYLMDL 194
           RMF N  EL SD   +      FSN +D+CEA  K+ ++L
Sbjct: 463 RMFKNSKEL-SDTMTKTERHHLFSNITDVCEASKKFFIEL 501


>AY552599-1|AAS59842.1|  871|Homo sapiens SH3-containing guanine
           nucleotide exchange factor protein.
          Length = 871

 Score = 31.9 bits (69), Expect = 0.37
 Identities = 17/40 (42%), Positives = 23/40 (57%)
 Frame = +3

Query: 75  RMFGNVVELCSDAAVQVWNKKPFSNASDLCEAFHKYLMDL 194
           RMF N  EL SD   +      FSN +D+CEA  K+ ++L
Sbjct: 463 RMFKNSKEL-SDTMTKTERHHLFSNITDVCEASKKFFIEL 501


>AF415175-1|AAL27001.1|  871|Homo sapiens putative SH3
           domain-containing guanine exchange factor SGEF protein.
          Length = 871

 Score = 31.9 bits (69), Expect = 0.37
 Identities = 17/40 (42%), Positives = 23/40 (57%)
 Frame = +3

Query: 75  RMFGNVVELCSDAAVQVWNKKPFSNASDLCEAFHKYLMDL 194
           RMF N  EL SD   +      FSN +D+CEA  K+ ++L
Sbjct: 463 RMFKNSKEL-SDTMTKTERHHLFSNITDVCEASKKFFIEL 501


>AK022884-1|BAB14292.1|  408|Homo sapiens protein ( Homo sapiens
           cDNA FLJ12822 fis, clone NT2RP2002741, weakly similar to
           Homo sapiens mRNA for Neuroblastoma. ).
          Length = 408

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 16/39 (41%), Positives = 22/39 (56%)
 Frame = +3

Query: 78  MFGNVVELCSDAAVQVWNKKPFSNASDLCEAFHKYLMDL 194
           MF N  EL SD   +      FSN +D+CEA  K+ ++L
Sbjct: 1   MFKNSKEL-SDTMTKTERHHLFSNITDVCEASKKFFIEL 38


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 39,370,852
Number of Sequences: 237096
Number of extensions: 755901
Number of successful extensions: 1382
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1301
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1382
length of database: 76,859,062
effective HSP length: 69
effective length of database: 60,499,438
effective search space used: 1330987636
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)