Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_E12
         (276 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL021481-2|CAA16334.1|  595|Caenorhabditis elegans Hypothetical ...    27   2.5  
AF149287-1|AAF99086.1|  696|Caenorhabditis elegans KAP protein.        27   2.5  
Z81592-7|CAB63314.1|  436|Caenorhabditis elegans Hypothetical pr...    26   3.3  
AL117202-3|CAB55094.2|  691|Caenorhabditis elegans Hypothetical ...    26   4.4  
AL032653-5|CAC42382.1|  251|Caenorhabditis elegans Hypothetical ...    26   4.4  
AL032653-4|CAA21715.1|  253|Caenorhabditis elegans Hypothetical ...    26   4.4  
U58746-7|AAB00628.2|  461|Caenorhabditis elegans Hypothetical pr...    25   5.8  

>AL021481-2|CAA16334.1|  595|Caenorhabditis elegans Hypothetical
           protein Y43F4B.5a protein.
          Length = 595

 Score = 26.6 bits (56), Expect = 2.5
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = +2

Query: 14  WHVFTNNHLGSEQLWW 61
           W VFT N +G+   WW
Sbjct: 326 WRVFTGNEMGALITWW 341


>AF149287-1|AAF99086.1|  696|Caenorhabditis elegans KAP protein.
          Length = 696

 Score = 26.6 bits (56), Expect = 2.5
 Identities = 11/35 (31%), Positives = 19/35 (54%)
 Frame = -1

Query: 189 PLNIYEMLHTDQTHLKKASCSKLVLLRPSIILQHC 85
           P+N+  + H  + HLK+ S    +    ++ILQ C
Sbjct: 23  PINVESLGHQKRIHLKEMSLDVDIRALSNVILQKC 57


>Z81592-7|CAB63314.1|  436|Caenorhabditis elegans Hypothetical
           protein T16G1.7 protein.
          Length = 436

 Score = 26.2 bits (55), Expect = 3.3
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +3

Query: 21  SLQITISEVNNFGGHQFKRMFG 86
           SL +T  E+N+  G  FK+M G
Sbjct: 199 SLHLTEDEINSISGFDFKQMMG 220


>AL117202-3|CAB55094.2|  691|Caenorhabditis elegans Hypothetical
           protein Y47D3A.4 protein.
          Length = 691

 Score = 25.8 bits (54), Expect = 4.4
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = +3

Query: 36  ISEVNNFGGHQFKRMFGNVVELC 104
           +S VNN+GG   K    NV+  C
Sbjct: 112 LSAVNNYGGDHHKSDLSNVLNYC 134


>AL032653-5|CAC42382.1|  251|Caenorhabditis elegans Hypothetical
           protein Y54E5B.3b protein.
          Length = 251

 Score = 25.8 bits (54), Expect = 4.4
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = +3

Query: 114 AVQVWNKKPFSNASDLCEAFHKYLMD 191
           +V++  ++     SD+C+ F KYL D
Sbjct: 135 SVRILQERQIEELSDICKDFKKYLRD 160


>AL032653-4|CAA21715.1|  253|Caenorhabditis elegans Hypothetical
           protein Y54E5B.3a protein.
          Length = 253

 Score = 25.8 bits (54), Expect = 4.4
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = +3

Query: 114 AVQVWNKKPFSNASDLCEAFHKYLMD 191
           +V++  ++     SD+C+ F KYL D
Sbjct: 137 SVRILQERQIEELSDICKDFKKYLRD 162


>U58746-7|AAB00628.2|  461|Caenorhabditis elegans Hypothetical
           protein R05G6.10 protein.
          Length = 461

 Score = 25.4 bits (53), Expect = 5.8
 Identities = 15/63 (23%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
 Frame = +3

Query: 39  SEVNNFGGHQFKRMFGNVVELCSDAAVQV-WNKKPFSNASDLCEAFHKYLMDLSFEEKLV 215
           ++ +NF      RMF +++ LCS+ A  + ++ K     + L E      +D ++++K  
Sbjct: 89  ADSHNFAKEGRGRMFAHILRLCSEWATNIPYDFKTEYMRTRLNELLRLCAVDKTYQQKTT 148

Query: 216 VLK 224
            L+
Sbjct: 149 ELQ 151


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,489,482
Number of Sequences: 27780
Number of extensions: 119618
Number of successful extensions: 283
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 276
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 283
length of database: 12,740,198
effective HSP length: 69
effective length of database: 10,823,378
effective search space used: 238114316
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)