Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_E12
         (276 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    20   6.5  
DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    19   8.6  
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    19   8.6  

>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 19.8 bits (39), Expect = 6.5
 Identities = 8/11 (72%), Positives = 8/11 (72%)
 Frame = -3

Query: 103 HNSTTLPNIRL 71
           HNST  PNI L
Sbjct: 307 HNSTNPPNILL 317


>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 19.4 bits (38), Expect = 8.6
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = -1

Query: 48  SLPRWLFVKTCQIFMI 1
           SLPR  +VK   I+++
Sbjct: 294 SLPRISYVKAIDIYLV 309


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 19.4 bits (38), Expect = 8.6
 Identities = 11/47 (23%), Positives = 21/47 (44%)
 Frame = -3

Query: 208 FSSKLRSIKYL*NASHRSDAFEKGFLFQTCTAASEHNSTTLPNIRLN 68
           + SK  S+K   +   R    E+ +    C  A EH+     ++R++
Sbjct: 124 YCSKSFSVKENLSVHRRIHTKERPYKCDVCERAFEHSGKLHRHMRIH 170


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 77,277
Number of Sequences: 438
Number of extensions: 1427
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 48
effective length of database: 125,319
effective search space used:  5388717
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)