Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0002_E12
(276 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g48780.1 68418.m06036 disease resistance protein (TIR-NBS cla... 29 0.33
At5g54450.1 68418.m06781 hypothetical protein contains Pfam prof... 29 0.44
At1g30810.1 68414.m03767 transcription factor jumonji (jmj) fami... 28 0.77
At5g35840.1 68418.m04306 phytochrome C (PHYC) identical to SP|P1... 27 1.8
At4g16250.1 68417.m02465 phytochrome D (PHYD) nearly identical t... 27 1.8
At1g68960.1 68414.m07893 hypothetical protein contains Pfam prof... 27 2.3
At5g45150.1 68418.m05543 ribonuclease III family protein similar... 26 3.1
At5g02040.2 68418.m00125 prenylated rab acceptor (PRA1) family p... 26 3.1
At5g02040.1 68418.m00124 prenylated rab acceptor (PRA1) family p... 26 3.1
At1g51220.1 68414.m05761 zinc finger (C2H2 type) protein (WIP5) ... 26 3.1
At4g24610.1 68417.m03525 expressed protein 26 4.1
At4g04790.1 68417.m00701 pentatricopeptide (PPR) repeat-containi... 26 4.1
At1g74710.2 68414.m08655 isochorismate synthase 1 (ICS1) / isoch... 26 4.1
At1g30680.1 68414.m03751 toprim domain-containing protein contai... 26 4.1
At5g17910.1 68418.m02100 expressed protein 25 7.1
At4g33400.1 68417.m04747 dem protein-related / defective embryo ... 25 7.1
At3g18860.2 68416.m02396 transducin family protein / WD-40 repea... 25 7.1
At3g18860.1 68416.m02395 transducin family protein / WD-40 repea... 25 7.1
At1g30140.1 68414.m03685 hypothetical protein 25 7.1
At3g24130.1 68416.m03030 pectinesterase family protein contains ... 25 9.4
At2g18790.1 68415.m02187 phytochrome B (PHYB) Identical to SP|P1... 25 9.4
>At5g48780.1 68418.m06036 disease resistance protein (TIR-NBS
class), putative domain signature TIR-NBS exists,
suggestive of a disease resistance protein.
Length = 669
Score = 29.5 bits (63), Expect = 0.33
Identities = 13/43 (30%), Positives = 22/43 (51%)
Frame = +3
Query: 36 ISEVNNFGGHQFKRMFGNVVELCSDAAVQVWNKKPFSNASDLC 164
+S++ + G Q+ ++ EL V +WN S +SDLC
Sbjct: 142 LSQLVSIPGGQYSEIWDGDAELIHQITVDIWNIFVASKSSDLC 184
>At5g54450.1 68418.m06781 hypothetical protein contains Pfam profile
PF03478: Protein of unknown function (DUF295)
Length = 368
Score = 29.1 bits (62), Expect = 0.44
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = -1
Query: 120 VLLRPSIILQHCQTSV*TDDHQSCSLP 40
+ L P + L HCQT + T+ SCS P
Sbjct: 121 IRLPPLVTLPHCQTQIITNVAMSCSSP 147
>At1g30810.1 68414.m03767 transcription factor jumonji (jmj) family
protein / zinc finger (C5HC2 type) family protein
contains similarity to Swiss-Prot:P29375
retinoblastoma-binding protein 2 (RBBP-2) [Homo
sapiens]; contains Pfam domains PF02375: jmjN domain and
PF02373: jmjC domain; intron between exons 6 and 7 was
required to circumvent a frameshift. There could be an
underlying sequence error.
Length = 787
Score = 28.3 bits (60), Expect = 0.77
Identities = 15/32 (46%), Positives = 21/32 (65%)
Frame = +3
Query: 120 QVWNKKPFSNASDLCEAFHKYLMDLSFEEKLV 215
+VW P SNA+ L +A K+L DL FE+ L+
Sbjct: 325 KVWYGVPGSNATALEKAMRKHLPDL-FEDSLI 355
>At5g35840.1 68418.m04306 phytochrome C (PHYC) identical to
SP|P14714 Phytochrome C {Arabidopsis thaliana}
Length = 1111
Score = 27.1 bits (57), Expect = 1.8
Identities = 13/41 (31%), Positives = 23/41 (56%)
Frame = +3
Query: 138 PFSNASDLCEAFHKYLMDLSFEEKLVVLKLHPDLAGTLAAQ 260
P N LC+A K + +L+ ++++V K H D G + A+
Sbjct: 210 PSGNMLLLCDALVKEVSELTGYDRVMVYKFHEDGHGEVIAE 250
>At4g16250.1 68417.m02465 phytochrome D (PHYD) nearly identical to
SP|P42497 Phytochrome D {Arabidopsis thaliana}
Length = 1164
Score = 27.1 bits (57), Expect = 1.8
Identities = 12/45 (26%), Positives = 24/45 (53%)
Frame = +3
Query: 138 PFSNASDLCEAFHKYLMDLSFEEKLVVLKLHPDLAGTLAAQGETN 272
P + LC+ + + DL+ ++++V K H D G + A+ + N
Sbjct: 252 PSGDIKLLCDTVVESVRDLTGYDRVMVYKFHEDEHGEVVAESKRN 296
>At1g68960.1 68414.m07893 hypothetical protein contains Pfam profile
PF03478: Protein of unknown function (DUF295)
Length = 376
Score = 26.6 bits (56), Expect = 2.3
Identities = 12/40 (30%), Positives = 18/40 (45%)
Frame = +3
Query: 90 VVELCSDAAVQVWNKKPFSNASDLCEAFHKYLMDLSFEEK 209
V L V W ++N DLC+ HK ++ EE+
Sbjct: 259 VESLTDKGEVATWGDTRYNNNKDLCKKTHKIMVIRQDEEQ 298
>At5g45150.1 68418.m05543 ribonuclease III family protein similar to
CAF protein (RNA helicase/RNAseIII) [Arabidopsis
thaliana] GI:6102610; contains Pfam profiles PF00035:
Double-stranded RNA binding motif, PF00636 RNase3 domain
Length = 957
Score = 26.2 bits (55), Expect = 3.1
Identities = 15/44 (34%), Positives = 25/44 (56%)
Frame = -3
Query: 142 KGFLFQTCTAASEHNSTTLPNIRLN**PPKLFTSEMVICKDMPN 11
KG LF++C+ S++LP N ++ T +MV+ KD P+
Sbjct: 793 KGKLFESCSV----ESSSLPTTSENPSTYEMTTKQMVVDKDSPH 832
>At5g02040.2 68418.m00125 prenylated rab acceptor (PRA1) family
protein contains Pfam PF03208: PRA1 family protein
Length = 209
Score = 26.2 bits (55), Expect = 3.1
Identities = 8/14 (57%), Positives = 10/14 (71%)
Frame = -1
Query: 51 CSLPRWLFVKTCQI 10
C PRW+FV TC +
Sbjct: 138 CGQPRWVFVLTCSL 151
>At5g02040.1 68418.m00124 prenylated rab acceptor (PRA1) family
protein contains Pfam PF03208: PRA1 family protein
Length = 209
Score = 26.2 bits (55), Expect = 3.1
Identities = 8/14 (57%), Positives = 10/14 (71%)
Frame = -1
Query: 51 CSLPRWLFVKTCQI 10
C PRW+FV TC +
Sbjct: 138 CGQPRWVFVLTCSL 151
>At1g51220.1 68414.m05761 zinc finger (C2H2 type) protein (WIP5)
identical to WIP5 protein [Arabidopsis thaliana]
gi|18376498|emb|CAC86167; contains Pfam domain, PF00096:
Zinc finger, C2H2 type
Length = 337
Score = 26.2 bits (55), Expect = 3.1
Identities = 15/60 (25%), Positives = 30/60 (50%)
Frame = -3
Query: 265 SPCAANVPAKSGCNFNTTNFSSKLRSIKYL*NASHRSDAFEKGFLFQTCTAASEHNSTTL 86
+P +N+ +GC+ N+ N+S+ L I + + S+ ++ T T ++ NS L
Sbjct: 3 NPACSNL-FNNGCDHNSFNYSTSLSYIYNSHGSYYYSNTTNPNYINHTHTTSTSPNSPPL 61
>At4g24610.1 68417.m03525 expressed protein
Length = 1145
Score = 25.8 bits (54), Expect = 4.1
Identities = 11/33 (33%), Positives = 17/33 (51%)
Frame = +3
Query: 126 WNKKPFSNASDLCEAFHKYLMDLSFEEKLVVLK 224
WN P D E FH Y+M +++L +L+
Sbjct: 801 WNISPIQGGVDAKELFHLYIMIWIQDKRLSLLE 833
>At4g04790.1 68417.m00701 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 713
Score = 25.8 bits (54), Expect = 4.1
Identities = 12/36 (33%), Positives = 17/36 (47%)
Frame = -3
Query: 223 FNTTNFSSKLRSIKYL*NASHRSDAFEKGFLFQTCT 116
F N SS L +K + A + D+ G+L CT
Sbjct: 381 FREKNVSSALMVVKQMKEAGVKPDSITFGYLINNCT 416
>At1g74710.2 68414.m08655 isochorismate synthase 1 (ICS1) /
isochorismate mutase identical to GI:17223087 and
GB:AF078080; contains Pfam profile PF00425: chorismate
binding enzyme; contains TIGRfam profile TIGR00543:
isochorismate synthases; identical to cDNA isochorismate
synthase 1 precursor (ICS1) nuclear gene for plastid
product GI:17223086
Length = 622
Score = 25.8 bits (54), Expect = 4.1
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = -3
Query: 112 ASEHNSTTLPNIRLN**PPKLFTSEMVICKDMPNFY 5
+SE N L ++ K+F+ MV+C PNFY
Sbjct: 540 SSEWNELDLKISQVRAFVQKMFSDIMVLCYQNPNFY 575
>At1g30680.1 68414.m03751 toprim domain-containing protein contains
Pfam profile: PF01751 toprim domain
Length = 709
Score = 25.8 bits (54), Expect = 4.1
Identities = 11/29 (37%), Positives = 15/29 (51%)
Frame = -1
Query: 171 MLHTDQTHLKKASCSKLVLLRPSIILQHC 85
+L Q H +K SCS VL+ L+ C
Sbjct: 4 LLRLPQIHFRKLSCSMSVLMGSKQFLEFC 32
>At5g17910.1 68418.m02100 expressed protein
Length = 1342
Score = 25.0 bits (52), Expect = 7.1
Identities = 15/42 (35%), Positives = 21/42 (50%)
Frame = +3
Query: 147 NASDLCEAFHKYLMDLSFEEKLVVLKLHPDLAGTLAAQGETN 272
+ASD E D F+E+ KLH D+A + GET+
Sbjct: 592 SASDHDEEKSHSSEDSDFDEQADSKKLHHDVAEIVLGSGETH 633
>At4g33400.1 68417.m04747 dem protein-related / defective embryo and
meristems protein-related identical to dem GI:2190419
from [Lycopersicon esculentum]
Length = 645
Score = 25.0 bits (52), Expect = 7.1
Identities = 13/27 (48%), Positives = 16/27 (59%)
Frame = -1
Query: 177 YEMLHTDQTHLKKASCSKLVLLRPSII 97
+E H DQ LKK C K+VL SI+
Sbjct: 584 HECYH-DQEGLKKCYCYKIVLRNESIV 609
>At3g18860.2 68416.m02396 transducin family protein / WD-40 repeat
family protein contains seven G-protein beta WD-40
repeats; similar to phospholipase a-2-activating protein
SP:P27612 from [Mus musculus]
Length = 760
Score = 25.0 bits (52), Expect = 7.1
Identities = 12/45 (26%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
Frame = +3
Query: 84 GNVVELCSDAAVQVWNKKPFSNASDL-CEAFHKYLMDLSFEEKLV 215
G++V CSD V+VW + + A + +A+ + K V
Sbjct: 280 GDIVTACSDGVVRVWTVRHDAIADQMEIDAYDSQISQYKLSRKKV 324
>At3g18860.1 68416.m02395 transducin family protein / WD-40 repeat
family protein contains seven G-protein beta WD-40
repeats; similar to phospholipase a-2-activating protein
SP:P27612 from [Mus musculus]
Length = 760
Score = 25.0 bits (52), Expect = 7.1
Identities = 12/45 (26%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
Frame = +3
Query: 84 GNVVELCSDAAVQVWNKKPFSNASDL-CEAFHKYLMDLSFEEKLV 215
G++V CSD V+VW + + A + +A+ + K V
Sbjct: 280 GDIVTACSDGVVRVWTVRHDAIADQMEIDAYDSQISQYKLSRKKV 324
>At1g30140.1 68414.m03685 hypothetical protein
Length = 221
Score = 25.0 bits (52), Expect = 7.1
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = -3
Query: 232 GCNFNTTNFSSKLRSIKYL*NASHRSDAFEKGF 134
GCN N N+ S+L+ +K L + F GF
Sbjct: 57 GCNKNHKNYMSRLKFLKNLYQSYLDLKRFSSGF 89
>At3g24130.1 68416.m03030 pectinesterase family protein contains
Pfam profile: PF01095 Pectinesterase
Length = 335
Score = 24.6 bits (51), Expect = 9.4
Identities = 10/17 (58%), Positives = 12/17 (70%)
Frame = +3
Query: 222 KLHPDLAGTLAAQGETN 272
+L P LAG + AQG TN
Sbjct: 208 QLEPGLAGYITAQGRTN 224
>At2g18790.1 68415.m02187 phytochrome B (PHYB) Identical to
SP|P14713 Phytochrome B {Arabidopsis thaliana}
Length = 1172
Score = 24.6 bits (51), Expect = 9.4
Identities = 10/36 (27%), Positives = 21/36 (58%)
Frame = +3
Query: 159 LCEAFHKYLMDLSFEEKLVVLKLHPDLAGTLAAQGE 266
LC+ + + DL+ ++++V K H D G + A+ +
Sbjct: 256 LCDTVVESVRDLTGYDRVMVYKFHEDEHGEVVAESK 291
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,014,597
Number of Sequences: 28952
Number of extensions: 105940
Number of successful extensions: 273
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 269
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 273
length of database: 12,070,560
effective HSP length: 69
effective length of database: 10,072,872
effective search space used: 221603184
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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