Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_E11
         (623 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_43840| Best HMM Match : NDK (HMM E-Value=0)                        208   2e-54
SB_45281| Best HMM Match : No HMM Matches (HMM E-Value=.)              74   8e-14
SB_27914| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.3  
SB_26487| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.1  
SB_28588| Best HMM Match : SAM_PNT (HMM E-Value=2.3)                   27   9.4  
SB_25491| Best HMM Match : Peptidase_M50 (HMM E-Value=2.2)             27   9.4  
SB_12216| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.4  

>SB_43840| Best HMM Match : NDK (HMM E-Value=0)
          Length = 786

 Score =  208 bits (509), Expect = 2e-54
 Identities = 96/148 (64%), Positives = 111/148 (75%)
 Frame = +3

Query: 132  ERTFLMVKPDGVQRGLVGTIIERFEKKGFKLVGLKFVWPSEELLQQHYSDLASRPFFPGL 311
            ERTFLM+KPD V RGL+G II RFEKKGFKLV +KFV  SE+  ++HY  LA   F+ GL
Sbjct: 639  ERTFLMIKPDAVSRGLIGEIISRFEKKGFKLVAMKFVKKSEDHFRKHYESLAKLKFYDGL 698

Query: 312  VKYMSSGPVVPMVWEGLNVVKTGRQMLGATNPADSQPGTIRGDLCIQVGRNIIHGSDSVE 491
             KYMS  PV  MVWEGL VVKT R MLG T+PA S PGTIRGD  I +GRNIIHGSD+VE
Sbjct: 699  CKYMSQTPVCAMVWEGLGVVKTARVMLGETDPAKSLPGTIRGDFSIHIGRNIIHGSDAVE 758

Query: 492  SANKEIALWFTEKEVVGWTPAAENWVYE 575
            +A +EIALWF + E+V WTP    W+YE
Sbjct: 759  TAKEEIALWFKDDELVDWTPCNNPWMYE 786



 Score =  128 bits (308), Expect = 5e-30
 Identities = 67/109 (61%), Positives = 78/109 (71%)
 Frame = +3

Query: 132 ERTFLMVKPDGVQRGLVGTIIERFEKKGFKLVGLKFVWPSEELLQQHYSDLASRPFFPGL 311
           ERTF+MVKPDGVQRGLVG II+RFE+KGFKLV LK V  SEE L++HY+DLA  PF+PGL
Sbjct: 127 ERTFIMVKPDGVQRGLVGEIIKRFEQKGFKLVALKMVQESEEHLKKHYADLAHLPFYPGL 186

Query: 312 VKYMSSGPVVPMVWEGLNVVKTGRQMLGATNPADSQPGTIRGDLCIQVG 458
           VK+MSSGPVV M                    ADS+PGTIRGD C+ +G
Sbjct: 187 VKFMSSGPVVAM--------------------ADSKPGTIRGDFCVHIG 215


>SB_45281| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1256

 Score = 74.1 bits (174), Expect = 8e-14
 Identities = 46/139 (33%), Positives = 73/139 (52%), Gaps = 3/139 (2%)
 Frame = +3

Query: 132  ERTFLMVKPDGVQRGLVGTIIERFEKKGFKLVGLKFVWPSEELLQQHYSDLASRPFFPGL 311
            + T  ++KP+ V+      I +R ++ GFK+   K V  S+EL  Q Y +   + FF GL
Sbjct: 673  QSTVAVIKPE-VEPDQRELIKQRIKEAGFKIQLQKEVTLSKELASQFYHEHEGKDFFEGL 731

Query: 312  VKYMSSGPVVPMVWEGLNVVKTGRQMLGATNPADSQ---PGTIRGDLCIQVGRNIIHGSD 482
              YMSSGP + MV    + V   R ++G  +P  ++   P +IR  L   V +N++HG  
Sbjct: 732  TDYMSSGPTMFMVLSKEDAVSGWRSLMGPVDPEQAKEMAPESIRAALGKDVMKNVVHGPS 791

Query: 483  SVESANKEIALWFTEKEVV 539
              E A K I  +F E +++
Sbjct: 792  DPEKAGKVIKEFFPEAKIL 810



 Score = 66.1 bits (154), Expect = 2e-11
 Identities = 41/142 (28%), Positives = 74/142 (52%), Gaps = 4/142 (2%)
 Frame = +3

Query: 126 QRERTFLMVKPDGVQRGLVGTIIERFEKKGFKLVGLKFVWPSEELLQQHYSDLASRPFFP 305
           Q +RT  +++PD + R    +I+ + ++ GF++   K +  + E  ++ YS+   + FF 
Sbjct: 536 QLQRTLALIRPDAL-RSRRESIMSKIQEAGFEIAMSKEMHLTREQAEEFYSEHKDQEFFD 594

Query: 306 GLVKYMSSGPVVPMVWEGLNVVKTGRQMLG---ATNPADSQPGTIRGDLCIQVGR-NIIH 473
            LV  MSSGP++ +     + ++  R MLG        D  P ++R    ++    N +H
Sbjct: 595 TLVTNMSSGPMMALCLAREDAIEGWRGMLGPKEVEKAKDEAPESLRAQFQVEDSPINPLH 654

Query: 474 GSDSVESANKEIALWFTEKEVV 539
           GSD+ E+A KEI  +F  +  V
Sbjct: 655 GSDTAENAEKEIQKFFPMQSTV 676



 Score = 28.3 bits (60), Expect = 5.4
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = +3

Query: 462 NIIHGSDSVESANKEIALWFTE 527
           N +HG DS ESA +E+A +F +
Sbjct: 501 NAVHGCDSNESAARELAFFFPD 522


>SB_27914| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 220

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 21/57 (36%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
 Frame = -1

Query: 506 FLVSRFDTIGT--VDDITSNLDT*VSANGTGLRISWIGSTEHLTASFDDIQALPNHG 342
           FLV   D  G   VD    +LD  +S  G G+R+S IG+T   TA F++   +   G
Sbjct: 152 FLVGNVDESGRRLVDICRQSLDEAISICGPGVRMSTIGNTIR-TAQFEETVLITEDG 207


>SB_26487| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 941

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 21/58 (36%), Positives = 27/58 (46%)
 Frame = -1

Query: 515 ESDFLVSRFDTIGTVDDITSNLDT*VSANGTGLRISWIGSTEHLTASFDDIQALPNHG 342
           E D   SR D+IGT  +  SNL         G+R S +   E L  + DD+Q    HG
Sbjct: 126 EHDRSTSR-DSIGTGGN--SNLALTPDLRAEGIRTSLMFQVESLQENIDDLQEQVTHG 180


>SB_28588| Best HMM Match : SAM_PNT (HMM E-Value=2.3)
          Length = 202

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 11/38 (28%), Positives = 20/38 (52%)
 Frame = +3

Query: 450 QVGRNIIHGSDSVESANKEIALWFTEKEVVGWTPAAEN 563
           ++ + I+   +SV +  +    W + K V+ W  AAEN
Sbjct: 109 KISKKILDRINSVIAKKRNFNQWKSTKAVIDWVKAAEN 146


>SB_25491| Best HMM Match : Peptidase_M50 (HMM E-Value=2.2)
          Length = 771

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 15/55 (27%), Positives = 26/55 (47%), Gaps = 3/55 (5%)
 Frame = +3

Query: 363 NVVKTGRQMLGATNPADSQPGTIRG-DLCIQVGRNIIHG--SDSVESANKEIALW 518
           +V KTG  ++GA  P  ++P  +    L      ++I      ++ES N   +LW
Sbjct: 152 SVTKTGSSVIGAEEPTTTEPNALDSKSLVTNTAPSVIGAKPDTTIESKNYVYSLW 206


>SB_12216| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2992

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 18/69 (26%), Positives = 30/69 (43%), Gaps = 1/69 (1%)
 Frame = -2

Query: 622  DKFRKVLLIFVCSGIYSYTQFSAAGVHPTTSFSVNQRAISLLADSTLSEPWMI-LRPTWI 446
            DK R    +   +   S+T    +G+HP T + +   A ++  +   SEP+ +       
Sbjct: 1520 DKLRNETFVQTINASLSHT---LSGLHPYTDYEIRVAAFTVKGEGNASEPFEVKTMEDAP 1576

Query: 445  HKSPRMVPG 419
             K PR V G
Sbjct: 1577 SKPPRNVSG 1585


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,278,443
Number of Sequences: 59808
Number of extensions: 403617
Number of successful extensions: 925
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 875
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 923
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1548368000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)