Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_E11
         (623 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g11010.1 68417.m01790 nucleoside diphosphate kinase 3, mitoch...   209   1e-54
At4g23900.1 68417.m03438 nucleoside diphosphate kinase 4 (NDK4) ...   206   7e-54
At4g09320.1 68417.m01542 nucleoside diphosphate kinase 1 (NDK1) ...   205   2e-53
At5g63310.1 68418.m07945 nucleotide diphosphate kinase II, chlor...   197   4e-51
At1g17410.1 68414.m02126 nucleoside diphosphate kinase family pr...    88   4e-18
At4g22980.1 68417.m03316 expressed protein ; expression supporte...    28   4.4  
At1g14250.1 68414.m01687 nucleoside phosphatase family protein /...    27   7.7  

>At4g11010.1 68417.m01790 nucleoside diphosphate kinase 3,
           mitochondrial (NDK3) identical to Nucleoside diphosphate
           kinase III, mitochondrial precursor  (NDK III) (NDP
           kinase III) (NDPK III) (SP:O49203) [Arabidopsis
           thaliana]; contains Pfam PF00334 : Nucleoside
           diphosphate kinase domain;
          Length = 238

 Score =  209 bits (511), Expect = 1e-54
 Identities = 90/154 (58%), Positives = 120/154 (77%)
 Frame = +3

Query: 111 EIMADQRERTFLMVKPDGVQRGLVGTIIERFEKKGFKLVGLKFVWPSEELLQQHYSDLAS 290
           E++A + ERTF+ +KPDGVQRGL+  II RFE+KGFKLVG+K + PS++  Q+HY DL  
Sbjct: 82  EVLAAEMERTFIAIKPDGVQRGLISEIISRFERKGFKLVGIKVIVPSKDFAQKHYHDLKE 141

Query: 291 RPFFPGLVKYMSSGPVVPMVWEGLNVVKTGRQMLGATNPADSQPGTIRGDLCIQVGRNII 470
           RPFF GL  ++SSGPV+ MVWEG  V++ GR+++GAT+P  S+PGTIRGDL + VGRNII
Sbjct: 142 RPFFNGLCDFLSSGPVIAMVWEGDGVIRYGRKLIGATDPQKSEPGTIRGDLAVTVGRNII 201

Query: 471 HGSDSVESANKEIALWFTEKEVVGWTPAAENWVY 572
           HGSD  E+A  EI+LWF  +E+V +T  +E W+Y
Sbjct: 202 HGSDGPETAKDEISLWFKPQELVSYTSNSEKWLY 235


>At4g23900.1 68417.m03438 nucleoside diphosphate kinase 4 (NDK4)
           contains Pfam PF00334 : Nucleoside diphosphate kinase
           domain; identical to nucleoside diphosphate kinase 4
           (GI:11990430)  [Arabidopsis thaliana]
          Length = 237

 Score =  206 bits (504), Expect = 7e-54
 Identities = 91/154 (59%), Positives = 118/154 (76%)
 Frame = +3

Query: 111 EIMADQRERTFLMVKPDGVQRGLVGTIIERFEKKGFKLVGLKFVWPSEELLQQHYSDLAS 290
           E +A + ERTF+ +KPDGVQRGL+  II RFE+KG+KLVG+K + PS+   Q+HY DL  
Sbjct: 81  EALAAEMERTFIAIKPDGVQRGLISEIITRFERKGYKLVGIKVMVPSKGFAQKHYHDLKE 140

Query: 291 RPFFPGLVKYMSSGPVVPMVWEGLNVVKTGRQMLGATNPADSQPGTIRGDLCIQVGRNII 470
           RPFF GL  ++SSGPVV MVWEG  V++ GR+++GAT+P  S+PGTIRGDL + VGRNII
Sbjct: 141 RPFFNGLCNFLSSGPVVAMVWEGEGVIRYGRKLIGATDPQKSEPGTIRGDLAVVVGRNII 200

Query: 471 HGSDSVESANKEIALWFTEKEVVGWTPAAENWVY 572
           HGSD  E+A  EI+LWF  +E+V +T  AE W+Y
Sbjct: 201 HGSDGPETAKDEISLWFKPEELVSYTSNAEKWIY 234


>At4g09320.1 68417.m01542 nucleoside diphosphate kinase 1 (NDK1)
           identical to identical to Nucleoside diphosphate kinase
           I (NDK I) (NDP kinase I) (NDPK I) (SP:P39207)
           [Arabidopsis thaliana]; contains Pfam PF00334 :
           Nucleoside diphosphate kinase domain;
          Length = 169

 Score =  205 bits (501), Expect = 2e-53
 Identities = 93/148 (62%), Positives = 113/148 (76%)
 Frame = +3

Query: 132 ERTFLMVKPDGVQRGLVGTIIERFEKKGFKLVGLKFVWPSEELLQQHYSDLASRPFFPGL 311
           E+TF+M+KPDGVQRGL+G +I RFEKKGF L GLK +       ++HY DL+S+ FF GL
Sbjct: 22  EQTFIMIKPDGVQRGLIGEVICRFEKKGFTLKGLKLISVERSFAEKHYEDLSSKSFFSGL 81

Query: 312 VKYMSSGPVVPMVWEGLNVVKTGRQMLGATNPADSQPGTIRGDLCIQVGRNIIHGSDSVE 491
           V Y+ SGPVV M+WEG NVV TGR+++GATNPA S+PGTIRGD  I +GRN+IHGSDSVE
Sbjct: 82  VDYIVSGPVVAMIWEGKNVVLTGRKIIGATNPAASEPGTIRGDFAIDIGRNVIHGSDSVE 141

Query: 492 SANKEIALWFTEKEVVGWTPAAENWVYE 575
           SA KEIALWF +   V W  +   WVYE
Sbjct: 142 SARKEIALWFPDGP-VNWQSSVHPWVYE 168


>At5g63310.1 68418.m07945 nucleotide diphosphate kinase II,
           chloroplast (NDPK2) identical to SP|O64903 Nucleoside
           diphosphate kinase II, chloroplast precursor (NDK II)
           (NDP kinase II) (NDPK II) (NDPK Ia) [Arabidopsis
           thaliana]; contains Pfam PF00334 : Nucleoside
           diphosphate kinase domain; contains Pfam profile
           PF00334: Nucleoside diphosphate kinase
          Length = 231

 Score =  197 bits (481), Expect = 4e-51
 Identities = 84/148 (56%), Positives = 112/148 (75%)
 Frame = +3

Query: 132 ERTFLMVKPDGVQRGLVGTIIERFEKKGFKLVGLKFVWPSEELLQQHYSDLASRPFFPGL 311
           E T++MVKPDG+QRGLVG II RFEKKGFKL+GLK     +EL ++HY DL+++ FFP L
Sbjct: 84  EETYIMVKPDGIQRGLVGEIISRFEKKGFKLIGLKMFQCPKELAEEHYKDLSAKSFFPNL 143

Query: 312 VKYMSSGPVVPMVWEGLNVVKTGRQMLGATNPADSQPGTIRGDLCIQVGRNIIHGSDSVE 491
           ++Y++SGPVV M WEG+ VV + R+++G T+P  ++PGTIRGDL +Q GRNI+HGSDS E
Sbjct: 144 IEYITSGPVVCMAWEGVGVVASARKLIGKTDPLQAEPGTIRGDLAVQTGRNIVHGSDSPE 203

Query: 492 SANKEIALWFTEKEVVGWTPAAENWVYE 575
           +  +EI LWF E E+  W  A   W+ E
Sbjct: 204 NGKREIGLWFKEGELCKWDSALATWLRE 231


>At1g17410.1 68414.m02126 nucleoside diphosphate kinase family
           protein contains Pfam PF00334 : Nucleoside diphosphate
           kinase domain; similar to Nucleoside diphosphate kinase
           homolog 5 (NDK-H 5) (NDP kinase homolog 5) (nm23-H5)
           (Testis-specific nm23 homolog) (Inhibitor of p53-induced
           apoptosis-beta) (IPIA-beta) (SP:P56597) {Homo sapiens}
          Length = 181

 Score = 88.2 bits (209), Expect = 4e-18
 Identities = 55/143 (38%), Positives = 72/143 (50%), Gaps = 3/143 (2%)
 Frame = +3

Query: 120 ADQRERTFLMVKPDGVQRGLVGTIIERFEKKGFKLVGLKFVWPSEELLQQHYSDLASRPF 299
           A   ERT  M+KPDGV       I     + GF +V        +E     Y + +SR F
Sbjct: 29  ASSEERTLAMIKPDGVSGNYTEEIKTIVVEAGFNIVKEMLTQLDKETASAFYEEHSSRSF 88

Query: 300 FPGLVKYMSSGPVVPMVWEGLNVVKTGRQMLGATNPAD---SQPGTIRGDLCIQVGRNII 470
           FP LV YM+SGPV+ MV E  N V   R ++G T+      S P +IR        +N +
Sbjct: 89  FPHLVTYMTSGPVLVMVLEKRNAVSDWRDLIGPTDAEKAKISHPHSIRALCGKNSQKNCV 148

Query: 471 HGSDSVESANKEIALWFTEKEVV 539
           HGSDS  SA +EI  +F  K+VV
Sbjct: 149 HGSDSTSSAEREIKFFF--KDVV 169


>At4g22980.1 68417.m03316 expressed protein ; expression supported
           by MPSS
          Length = 559

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = +3

Query: 180 VGTIIERFEKKGFKLVGLKFVWPSEELLQQ 269
           V  +I   EKKG K    +F WPS E+L +
Sbjct: 205 VEEMIRISEKKGIKPQSAEFSWPSTEILSE 234


>At1g14250.1 68414.m01687 nucleoside phosphatase family protein /
           GDA1/CD39 family protein low similarity to SP|P97687
           Ectonucleoside triphosphate diphosphohydrolase 1 (EC
           3.6.1.5) (Ecto-apyrase) {Rattus norvegicus}; contains
           Pfam profile PF01150: GDA1/CD39 (nucleoside phosphatase)
           family
          Length = 488

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 10/37 (27%), Positives = 24/37 (64%)
 Frame = -1

Query: 365 IQALPNHGNNRSRTHVFYKTREKRAGR*VTVMLLQQL 255
           +Q LP++ ++ S TH+  K + K+A + + ++++  L
Sbjct: 6   VQILPDNQSSPSSTHMLTKPKSKKATKSIAMLIVASL 42


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,638,261
Number of Sequences: 28952
Number of extensions: 286454
Number of successful extensions: 775
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 748
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 774
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1265787216
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)