Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_E09
         (557 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0106 + 788967-789555,790139-790162,790339-791411                 31   0.62 
03_05_0836 - 28088832-28089422,28089626-28089831,28089985-28090330     28   0.85 
05_01_0121 - 833885-833949,834180-834430,834545-834604,834893-83...    28   4.4  
01_05_0548 + 23149271-23149568,23149766-23149845,23150137-231502...    28   5.8  
11_02_0058 + 7879859-7879951,7880844-7881078,7881165-7881535,788...    27   7.7  
03_05_0974 + 29324025-29324117,29325064-29325298,29325385-293257...    27   7.7  
01_06_0496 - 29795490-29796638,29796811-29796870,29798168-297983...    27   7.7  

>01_01_0106 + 788967-789555,790139-790162,790339-791411
          Length = 561

 Score = 31.1 bits (67), Expect = 0.62
 Identities = 21/68 (30%), Positives = 34/68 (50%), Gaps = 2/68 (2%)
 Frame = +3

Query: 234 PRLNHKPFSVTIDVKSDIATDA--VIKIFLGPKYNDDGFPITLEENWHKFYELDWFTHKI 407
           P L  + F V I  KSD+ +    V+++  G +  D G      +N H+ Y L+W   K+
Sbjct: 437 PELYSRNFGV-ISYKSDVYSFGMLVLEMVSGRRNLDPGI-----DNQHEVYFLEWIYEKV 490

Query: 408 TPGQNKIV 431
             GQN ++
Sbjct: 491 FTGQNLLI 498


>03_05_0836 - 28088832-28089422,28089626-28089831,28089985-28090330
          Length = 380

 Score = 27.9 bits (59), Expect(2) = 0.85
 Identities = 11/34 (32%), Positives = 21/34 (61%)
 Frame = -1

Query: 302 NGISGNIGLNVDGNTERLVVESWLTNLEVVWVTS 201
           NG +     +  G T+R+++ SWL+ LE+ + T+
Sbjct: 224 NGFTEAPETSNSGQTKRVLLSSWLSTLELAYTTA 257



 Score = 21.4 bits (43), Expect(2) = 0.85
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = -1

Query: 170 VSGIKLAIVKECD*FLNDNIIDFNADEMKFL 78
           VSG ++A+  +    L+ N++  + DEM  L
Sbjct: 298 VSGTRIALGDDGSIALSRNVVVLHVDEMLLL 328


>05_01_0121 -
           833885-833949,834180-834430,834545-834604,834893-834926,
           835746-835805,836409-836509,836939-837039,837209-837289,
           837580-837650,837738-837849,838138-838173,838865-838951,
           839055-839396
          Length = 466

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = +3

Query: 447 FSLFKEDSLPLTDLMKLLDEGKVPLYMSEGFECM 548
           F+ FKE+  PLT +   L  G  P  + +GF C+
Sbjct: 346 FNSFKENLNPLTVVHNWLGPGVCPKVVEKGFRCI 379


>01_05_0548 +
           23149271-23149568,23149766-23149845,23150137-23150223,
           23150421-23150729,23150774-23150899,23151977-23152360,
           23152603-23152608
          Length = 429

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 17/78 (21%), Positives = 37/78 (47%), Gaps = 5/78 (6%)
 Frame = +3

Query: 129 LVTFFDYSQFDATNSVFLTK-----KEIKTSYPHNFKVRQPRLNHKPFSVTIDVKSDIAT 293
           L   F +S F ++++  + +      ++KT    ++ ++ PRL +   S+  DV + +  
Sbjct: 64  LAAVFSFSSFTSSSNYVIRECLGSVLDLKTVATIDWSMKTPRLQYYTSSMVDDVFTRLGE 123

Query: 294 DAVIKIFLGPKYNDDGFP 347
           D  +K +    Y  +G P
Sbjct: 124 DIKVKPWAHTVYGKNGIP 141


>11_02_0058 +
           7879859-7879951,7880844-7881078,7881165-7881535,
           7881648-7882304
          Length = 451

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 22/85 (25%), Positives = 36/85 (42%)
 Frame = +3

Query: 39  INAFKHYLKPYPQEKLHFVGVKINDVVVEKLVTFFDYSQFDATNSVFLTKKEIKTSYPHN 218
           +N F+  L PYP  ++HF+      V+  +       S  + TNS F     +    P +
Sbjct: 252 VNEFQTNLVPYP--RIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRH 309

Query: 219 FKVRQPRLNHKPFSVTIDVKSDIAT 293
            K     L ++   V  DV + +AT
Sbjct: 310 GKYMACCLMYRGDVVPKDVNAAVAT 334


>03_05_0974 +
           29324025-29324117,29325064-29325298,29325385-29325755,
           29325864-29326520
          Length = 451

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 22/85 (25%), Positives = 36/85 (42%)
 Frame = +3

Query: 39  INAFKHYLKPYPQEKLHFVGVKINDVVVEKLVTFFDYSQFDATNSVFLTKKEIKTSYPHN 218
           +N F+  L PYP  ++HF+      V+  +       S  + TNS F     +    P +
Sbjct: 252 VNEFQTNLVPYP--RIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRH 309

Query: 219 FKVRQPRLNHKPFSVTIDVKSDIAT 293
            K     L ++   V  DV + +AT
Sbjct: 310 GKYMACCLMYRGDVVPKDVNAAVAT 334


>01_06_0496 -
           29795490-29796638,29796811-29796870,29798168-29798371,
           29798739-29798984,29799375-29799464
          Length = 582

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 15/38 (39%), Positives = 21/38 (55%)
 Frame = +3

Query: 384 LDWFTHKITPGQNKIVRNSNEFSLFKEDSLPLTDLMKL 497
           +D F   +T    KI RNS +FS    DS+P + L +L
Sbjct: 278 VDSFQTNMTVEPEKIKRNSRKFSSSAADSVPDSQLSEL 315


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,386,600
Number of Sequences: 37544
Number of extensions: 253848
Number of successful extensions: 631
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 616
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 631
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1269546012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)