Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_E09
         (557 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_49488| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.64 
SB_43557| Best HMM Match : Pentapeptide (HMM E-Value=8.1e-11)          29   2.6  
SB_8348| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   2.6  
SB_7722| Best HMM Match : TFR_dimer (HMM E-Value=2.6e-10)              29   3.4  
SB_36304| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.5  
SB_54290| Best HMM Match : Pkinase (HMM E-Value=1.3e-26)               28   5.9  
SB_7240| Best HMM Match : OMPdecase (HMM E-Value=0)                    28   5.9  
SB_23914| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.9  

>SB_49488| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1228

 Score = 31.1 bits (67), Expect = 0.64
 Identities = 18/99 (18%), Positives = 45/99 (45%), Gaps = 1/99 (1%)
 Frame = +3

Query: 153 QFDATNSVFLTKKEIKTSYPHNFKVRQPRLNHKPFSVTIDVKSDIATDAVIKIFLGPKYN 332
           + D  +SV +  + +  S   + +++  ++  + +   I V   + +   + I     Y 
Sbjct: 273 ELDTGSSVSIIPRNVYESTCKHLELKPAKVKLRTYGSEIIVPMGVVSARTLVITTNAMYV 332

Query: 333 DDGFPITL-EENWHKFYELDWFTHKITPGQNKIVRNSNE 446
            DG  + L   +W + ++L+W + K+  G+N  + +  E
Sbjct: 333 VDGPRVALFGRSWLRLFKLEWPSIKLVQGKNTALSDLTE 371



 Score = 31.1 bits (67), Expect = 0.64
 Identities = 18/99 (18%), Positives = 45/99 (45%), Gaps = 1/99 (1%)
 Frame = +3

Query: 153  QFDATNSVFLTKKEIKTSYPHNFKVRQPRLNHKPFSVTIDVKSDIATDAVIKIFLGPKYN 332
            + D  +SV +  + +  S   + +++  ++  + +   I V   + +   + I     Y 
Sbjct: 756  ELDTGSSVSIIPRNVYESTCKHLELKPAKVKLRTYGSEIIVPMGVVSARTLVITTNAMYV 815

Query: 333  DDGFPITL-EENWHKFYELDWFTHKITPGQNKIVRNSNE 446
             DG  + L   +W + ++L+W + K+  G+N  + +  E
Sbjct: 816  VDGPRVALFGRSWLRLFKLEWPSIKLVQGKNTALSDLTE 854


>SB_43557| Best HMM Match : Pentapeptide (HMM E-Value=8.1e-11)
          Length = 129

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 19/57 (33%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
 Frame = +1

Query: 7   SISYITGLWVTLTHSSIT*SLILKRNFISSALKSMMLSLRN*SHS-LTIANLMPLTV 174
           ++++ T + +TLTHS++T   +   N   S L    L+  N +HS LT + L  LT+
Sbjct: 1   TLTHPTLIHLTLTHSNLTHLTLTHSNLTHSTLTHSNLTHLNLTHSTLTYSTLTHLTL 57


>SB_8348| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 455

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 20/65 (30%), Positives = 32/65 (49%), Gaps = 1/65 (1%)
 Frame = +3

Query: 321 PKYNDDGFPITLEENWHKFYELDWFTHKITPGQNKIVR-NSNEFSLFKEDSLPLTDLMKL 497
           PK      P  + E+  KFYE + +  +I PG+ + V  N N   + ++  L L +L +L
Sbjct: 160 PKKGGRALPSDVLEHIVKFYESEEYP-RICPGKKEFVSVNENNVKVHRQKQLLLVNLHEL 218

Query: 498 LDEGK 512
             E K
Sbjct: 219 YVEYK 223


>SB_7722| Best HMM Match : TFR_dimer (HMM E-Value=2.6e-10)
          Length = 688

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 10/17 (58%), Positives = 14/17 (82%)
 Frame = -1

Query: 311 DLDNGISGNIGLNVDGN 261
           ++D G+SGN  LNVDG+
Sbjct: 397 NIDTGVSGNFSLNVDGS 413


>SB_36304| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 98

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = +3

Query: 360 ENWHKFYELDWFTHKITPGQNKIVRN 437
           + WHK YELD F  K +   N I+RN
Sbjct: 66  KEWHK-YELDKFMEKTSSYHNTILRN 90


>SB_54290| Best HMM Match : Pkinase (HMM E-Value=1.3e-26)
          Length = 239

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 17/46 (36%), Positives = 20/46 (43%)
 Frame = +3

Query: 366 WHKFYELDWFTHKITPGQNKIVRNSNEFSLFKEDSLPLTDLMKLLD 503
           W     L  F H I P +    R   EF+   ED+L L D M  LD
Sbjct: 167 WPSIINLPHF-HSIKPKRQYRRRIREEFNFLPEDALDLFDAMLTLD 211


>SB_7240| Best HMM Match : OMPdecase (HMM E-Value=0)
          Length = 474

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 14/31 (45%), Positives = 20/31 (64%)
 Frame = +3

Query: 84  LHFVGVKINDVVVEKLVTFFDYSQFDATNSV 176
           LH  G K++D VVE +  F + +QF AT+ V
Sbjct: 181 LHAQG-KVDDAVVESVREFLEANQFKATSDV 210


>SB_23914| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 587

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 12/27 (44%), Positives = 20/27 (74%), Gaps = 2/27 (7%)
 Frame = -1

Query: 311 DLDNGISGNIGLNVDGNT--ERLVVES 237
           ++D G+ GN  LN+DG+   E+L+VE+
Sbjct: 340 NIDVGVGGNFTLNMDGSALIEKLLVET 366


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,122,861
Number of Sequences: 59808
Number of extensions: 318114
Number of successful extensions: 854
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 802
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 850
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1300738331
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)