Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_E09
         (557 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g17490.1 68416.m02234 F-box family protein similar to F-box p...    34   0.056
At3g17480.1 68416.m02233 F-box family protein contains F-box dom...    32   0.23 
At2g23200.1 68415.m02771 protein kinase family protein contains ...    28   4.9  
At3g61160.2 68416.m06845 shaggy-related protein kinase beta / AS...    27   6.4  
At3g61160.1 68416.m06844 shaggy-related protein kinase beta / AS...    27   6.4  
At1g64290.1 68414.m07285 F-box protein-related contains TIGRFAM ...    27   6.4  
At2g02500.1 68415.m00189 expressed protein contains Pfam profile...    27   8.5  

>At3g17490.1 68416.m02234 F-box family protein similar to F-box
           protein family, AtFBX9 (GI:20197985) [Arabidopsis
           thaliana]; contains Pfam PF00646: F-box domain and
           TIGRFAM TIGR01640: F-box protein interaction domain
          Length = 388

 Score = 34.3 bits (75), Expect = 0.056
 Identities = 17/52 (32%), Positives = 28/52 (53%)
 Frame = -2

Query: 553 FGMHSKPSDIYNGTFPSSNNFMRSVNGKESSLKSENSFELRTILFCPGVILC 398
           F ++S  S+++     ++ + +    GK SSL   N FE+  I  C G+ILC
Sbjct: 62  FRIYSMSSNLHGLLHNNNIDLLMEFKGKLSSLNDLNDFEISQIYPCDGLILC 113


>At3g17480.1 68416.m02233 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 373

 Score = 32.3 bits (70), Expect = 0.23
 Identities = 12/39 (30%), Positives = 21/39 (53%)
 Frame = +3

Query: 351 TLEENWHKFYELDWFTHKITPGQNKIVRNSNEFSLFKED 467
           T+  +W KF  +D +TH+   G    +   N+ ++F ED
Sbjct: 291 TIVTSWSKFLRVDLYTHRFYNGVTFFIDEENKAAVFSED 329


>At2g23200.1 68415.m02771 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 834

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 19/67 (28%), Positives = 33/67 (49%), Gaps = 3/67 (4%)
 Frame = +3

Query: 279 SDIATDAVIKIFLGPKYNDDGFPITLEENWHKFYELDWFTHKITPGQNKIVRN---SNEF 449
           S +A    I++F  P  +D   P   ++N H  Y L+    KITP  + + R     ++ 
Sbjct: 177 SSLALINAIEVFSAP--DDLEIPSASDKNLHTIYRLNVGGEKITPDNDTLGRTWLPDDDD 234

Query: 450 SLFKEDS 470
            L+++DS
Sbjct: 235 FLYRKDS 241


>At3g61160.2 68416.m06845 shaggy-related protein kinase beta /
           ASK-beta (ASK2) identical to shaggy-related protein
           kinase beta SP:O23145 GI:2569931 from [Arabidopsis
           thaliana]
          Length = 438

 Score = 27.5 bits (58), Expect = 6.4
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = +3

Query: 315 LGPKYNDDGFPITLEENWHKFY 380
           + P+YND  FP    + WHK +
Sbjct: 337 MNPRYNDFKFPQIKAQPWHKIF 358


>At3g61160.1 68416.m06844 shaggy-related protein kinase beta /
           ASK-beta (ASK2) identical to shaggy-related protein
           kinase beta SP:O23145 GI:2569931 from [Arabidopsis
           thaliana]
          Length = 431

 Score = 27.5 bits (58), Expect = 6.4
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = +3

Query: 315 LGPKYNDDGFPITLEENWHKFY 380
           + P+YND  FP    + WHK +
Sbjct: 330 MNPRYNDFKFPQIKAQPWHKIF 351


>At1g64290.1 68414.m07285 F-box protein-related contains TIGRFAM
           TIGR01640 : F-box protein interaction domain;
          Length = 364

 Score = 27.5 bits (58), Expect = 6.4
 Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 3/50 (6%)
 Frame = -1

Query: 242 ESWLTNLEVVWVTSLNLFFGQEYTVSG--IKLAIVKECD*FLNDNI-IDF 102
           ESW  NL ++    ++ +F Q Y V G  ++ + V E     N+ + IDF
Sbjct: 39  ESWFVNLNLLRTNRISGYFIQHYIVKGHELRTSFVHERSDLQNNGVSIDF 88


>At2g02500.1 68415.m00189 expressed protein contains Pfam profile:
           PF01128 uncharacterized protein family UPF0007;
           identical to GP:12697583 2-C-methyl-D-erythritol
           4-phosphate cytidyltransferase {Arabidopsis thaliana};
           identical to cDNA
           4-Diphosphocytidyl-2C-methyl-D-erythritol synthase
           (ISPD)  GI:7385140
          Length = 302

 Score = 27.1 bits (57), Expect = 8.5
 Identities = 11/30 (36%), Positives = 20/30 (66%)
 Frame = +3

Query: 447 FSLFKEDSLPLTDLMKLLDEGKVPLYMSEG 536
           F L K + L +TD + +++  K P+Y+S+G
Sbjct: 249 FELVKSEGLEVTDDVSIVEYLKHPVYVSQG 278


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,422,529
Number of Sequences: 28952
Number of extensions: 226908
Number of successful extensions: 732
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 718
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 732
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1062855648
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)