Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_E08
         (490 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2D10.07c |||mitochondrial inner membrane peptidase complex c...    27   2.0  
SPBC2D10.18 |abc1|coq8|ABC1 kinase family protein|Schizosaccharo...    26   3.5  
SPAC1002.10c |sgt1||SGT1 family transcriptional regulator Sgt1|S...    25   6.1  
SPAC821.12 |orb6||serine/threonine protein kinase Orb6|Schizosac...    25   8.1  

>SPBC2D10.07c |||mitochondrial inner membrane peptidase complex
           catalytic subunit|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 157

 Score = 26.6 bits (56), Expect = 2.0
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = -3

Query: 389 IEIRIVAVNLFAHSLHRYLLQV 324
           I I +V +  F H +H YL QV
Sbjct: 7   IPIAVVQIAAFVHQIHEYLFQV 28


>SPBC2D10.18 |abc1|coq8|ABC1 kinase family
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 610

 Score = 25.8 bits (54), Expect = 3.5
 Identities = 12/43 (27%), Positives = 25/43 (58%), Gaps = 6/43 (13%)
 Frame = +3

Query: 279 DEEIKKYVKQILEGAN------LEQITMKTVCKQVYSHYPDFD 389
           D  + + ++++ +GA+      LEQ+ +K + K   +HY +FD
Sbjct: 256 DPRVSQILERVRDGAHSMPEKQLEQVMVKNLGKNWMTHYSEFD 298


>SPAC1002.10c |sgt1||SGT1 family transcriptional regulator
           Sgt1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 590

 Score = 25.0 bits (52), Expect = 6.1
 Identities = 11/35 (31%), Positives = 18/35 (51%)
 Frame = -3

Query: 425 DCRLDEVLLVREIEIRIVAVNLFAHSLHRYLLQVG 321
           +CR+D     +E E    ++N+F   L R  L+ G
Sbjct: 21  ECRIDVYFSEKEKESTEASINMFLAELERLQLEYG 55


>SPAC821.12 |orb6||serine/threonine protein kinase
           Orb6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 469

 Score = 24.6 bits (51), Expect = 8.1
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = -2

Query: 147 PSSPVYQQPLAVDPSS 100
           P  PV QQP +VDP +
Sbjct: 429 PEQPVTQQPASVDPQT 444


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,538,104
Number of Sequences: 5004
Number of extensions: 25373
Number of successful extensions: 81
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 79
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 81
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 190087364
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)