Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_E08
         (490 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_07_0019 + 40494709-40494767,40495619-40495703,40495777-404958...    32   0.28 
10_08_0300 - 16617956-16618510                                         31   0.50 
08_02_1614 - 28243532-28244589,28245149-28245383,28245524-282457...    30   0.87 
11_01_0567 + 4469926-4470055,4470827-4470886,4471418-4471635           29   1.5  
02_01_0782 + 5827364-5827441,5827733-5827787,5828761-5828849,582...    29   2.0  
06_02_0293 + 13849250-13849341,13850044-13850112,13850257-138502...    27   6.1  
07_03_0398 - 17690979-17690998,17691034-17691446,17691709-176917...    27   8.1  
01_06_0929 + 33091184-33091510,33092503-33092646,33093054-33097001     27   8.1  

>01_07_0019 +
           40494709-40494767,40495619-40495703,40495777-40495836,
           40495934-40496044,40496127-40496204,40496276-40496347,
           40496944-40497057,40498034-40498538,40499011-40499108,
           40499185-40499215,40499346-40499520,40499849-40500008,
           40501436-40501855,40502313-40503203
          Length = 952

 Score = 31.9 bits (69), Expect = 0.28
 Identities = 16/63 (25%), Positives = 32/63 (50%)
 Frame = +3

Query: 258 KAKRPPTDEEIKKYVKQILEGANLEQITMKTVCKQVYSHYPDFDLAHKKDFIKATVKSCI 437
           +A   PT EE+   V  IL+  +    T+  + +Q+ +H+   DL  +K  +K  ++  I
Sbjct: 369 EAGAAPTTEELHAVVSDILKEVDFNTATLADILRQLGTHF-KMDLMDRKSEVKHIIEEVI 427

Query: 438 SDI 446
           + +
Sbjct: 428 NSM 430


>10_08_0300 - 16617956-16618510
          Length = 184

 Score = 31.1 bits (67), Expect = 0.50
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = -2

Query: 336 SAPSWPPRGFASRISLSPRQWAAVLLSYPLA 244
           S  SW P+G A+  SL    WAA  L++ +A
Sbjct: 95  SGASWRPQGLAAAASLGTAAWAATALAFGVA 125


>08_02_1614 -
           28243532-28244589,28245149-28245383,28245524-28245734,
           28245834-28245907,28246465-28246665
          Length = 592

 Score = 30.3 bits (65), Expect = 0.87
 Identities = 19/46 (41%), Positives = 24/46 (52%)
 Frame = -2

Query: 372 GCKPVCTQSSSLSAPSWPPRGFASRISLSPRQWAAVLLSYPLARQI 235
           G K   + SSS SA      G A+ + LS R    VL S+PL+R I
Sbjct: 22  GAKASSSSSSSSSAADKAANGIAA-LKLSDRTCTGVLASHPLSRDI 66


>11_01_0567 + 4469926-4470055,4470827-4470886,4471418-4471635
          Length = 135

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = -2

Query: 51 WRS*RPALCETSRPPP 4
          W+  RPA C T+RPPP
Sbjct: 3  WQQRRPATCATARPPP 18


>02_01_0782 +
           5827364-5827441,5827733-5827787,5828761-5828849,
           5829167-5829191,5829645-5829683,5830316-5830433,
           5830857-5831023,5831155-5831518,5831589-5831701,
           5832185-5832310,5832436-5833339,5833694-5834036
          Length = 806

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 14/44 (31%), Positives = 22/44 (50%)
 Frame = +2

Query: 281 RGDKEIREANPRGGQLGADNDEDCVQTGLQPLSGFRSRAQEGLH 412
           R    +R  +P GG+L +  D     +  + LSG RSR+   +H
Sbjct: 719 RSRSPVRSRSPAGGKLRSHGDRSRSMSRSRSLSGSRSRSPPPIH 762


>06_02_0293 +
           13849250-13849341,13850044-13850112,13850257-13850266,
           13850448-13850483,13850978-13851039,13851260-13851359,
           13851428-13851469,13851756-13851839,13851955-13852095
          Length = 211

 Score = 27.5 bits (58), Expect = 6.1
 Identities = 10/12 (83%), Positives = 10/12 (83%)
 Frame = +2

Query: 119 KGCW*TGEEGQE 154
           KGCW  GEEGQE
Sbjct: 4   KGCWSKGEEGQE 15


>07_03_0398 -
           17690979-17690998,17691034-17691446,17691709-17691764,
           17691922-17692054,17694244-17694403,17694862-17694955,
           17695791-17695928,17696017-17696174,17696729-17696810,
           17697055-17697151,17698703-17698824,17699833-17699910,
           17700437-17700565,17701301-17701531
          Length = 636

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = -3

Query: 302 HVFLYLLVSGRPFCFLIRW 246
           HVFL L++S + FC++  W
Sbjct: 67  HVFLVLILSLKDFCYVSEW 85


>01_06_0929 + 33091184-33091510,33092503-33092646,33093054-33097001
          Length = 1472

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 15/53 (28%), Positives = 26/53 (49%)
 Frame = -1

Query: 469  STLPPYRLISEIHDLTVALMKSFLCARSKSG*WL*TCLHTVFIVICSKLAPSR 311
            +TLPP  ++  + +L   +++S  C RS  G    T L  + +  C  L  +R
Sbjct: 1197 TTLPPEEVLQHLGNLRYLVIRSCWCLRSFGGLRSATSLSEIRLFSCPSLQLAR 1249


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,002,329
Number of Sequences: 37544
Number of extensions: 189728
Number of successful extensions: 636
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 621
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 636
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1011709100
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)