Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_E08
         (490 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_385| Best HMM Match : SRP54_N (HMM E-Value=1.1)                     72   3e-13
SB_33463| Best HMM Match : 7tm_1 (HMM E-Value=0)                       28   4.7  

>SB_385| Best HMM Match : SRP54_N (HMM E-Value=1.1)
          Length = 210

 Score = 71.7 bits (168), Expect = 3e-13
 Identities = 30/62 (48%), Positives = 48/62 (77%)
 Frame = +3

Query: 255 KKAKRPPTDEEIKKYVKQILEGANLEQITMKTVCKQVYSHYPDFDLAHKKDFIKATVKSC 434
           K  K+PPT++++   VK +L+ A+L+ +T+K++CK+VY+ YP+FDL+ +K FIK TV S 
Sbjct: 144 KLKKQPPTNDDLVTVVKDLLKDADLKVVTVKSICKEVYAKYPEFDLSDRKGFIKETVYSV 203

Query: 435 IS 440
           IS
Sbjct: 204 IS 205


>SB_33463| Best HMM Match : 7tm_1 (HMM E-Value=0)
          Length = 390

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 14/43 (32%), Positives = 26/43 (60%)
 Frame = -3

Query: 428 FDCRLDEVLLVREIEIRIVAVNLFAHSLHRYLLQVGPLEDLLH 300
           F C+L  VL ++ + +    ++L   ++HRYL  + PL+ LL+
Sbjct: 126 FLCKL--VLFIQGVSVSCSVLSLTVLAIHRYLSVMHPLKKLLN 166


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,115,468
Number of Sequences: 59808
Number of extensions: 202102
Number of successful extensions: 575
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 556
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 575
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1038380485
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)