Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_E08
         (490 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g55660.1 68418.m06940 expressed protein similar to unknown pr...    34   0.059
At3g05430.1 68416.m00595 PWWP domain-containing protein contains...    30   0.73 
At4g20160.1 68417.m02949 expressed protein ; expression supporte...    28   2.9  
At1g52430.1 68414.m05919 ubiquitin carboxyl-terminal hydrolase-r...    27   5.1  
At5g42060.1 68418.m05120 expressed protein                             27   6.8  
At1g02870.1 68414.m00252 expressed protein                             27   6.8  
At5g50380.1 68418.m06240 exocyst subunit EXO70 family protein co...    27   9.0  
At2g15170.1 68415.m01730 plant basic secretory protein (BSP) fam...    27   9.0  

>At5g55660.1 68418.m06940 expressed protein similar to unknown
           protein (pir||T08929)
          Length = 778

 Score = 33.9 bits (74), Expect = 0.059
 Identities = 17/58 (29%), Positives = 31/58 (53%)
 Frame = +3

Query: 255 KKAKRPPTDEEIKKYVKQILEGANLEQITMKTVCKQVYSHYPDFDLAHKKDFIKATVK 428
           K   + P+DEE+K  +  IL+G +    T   + K++ + + +  LA KK  IK  ++
Sbjct: 680 KDKNKEPSDEELKTAIIDILKGVDFNTATFTDILKRLDAKF-NISLASKKSSIKRMIQ 736


>At3g05430.1 68416.m00595 PWWP domain-containing protein contains
           Pfam profile:PF00855 PWWP domain
          Length = 965

 Score = 30.3 bits (65), Expect = 0.73
 Identities = 14/23 (60%), Positives = 17/23 (73%)
 Frame = +3

Query: 255 KKAKRPPTDEEIKKYVKQILEGA 323
           KKAKRP TD+ I K + Q+LE A
Sbjct: 833 KKAKRPKTDKPITKPLNQLLEQA 855


>At4g20160.1 68417.m02949 expressed protein ; expression supported
           by MPSS
          Length = 1188

 Score = 28.3 bits (60), Expect = 2.9
 Identities = 15/36 (41%), Positives = 23/36 (63%)
 Frame = +3

Query: 246 PADKKAKRPPTDEEIKKYVKQILEGANLEQITMKTV 353
           P DKK  + P DEE KK V++   G N+E+ +++ V
Sbjct: 877 PNDKKGIKEPEDEESKK-VEREETGENVEEASVEFV 911


>At1g52430.1 68414.m05919 ubiquitin carboxyl-terminal
           hydrolase-related contains Pfam profiles PF00443:
           Ubiquitin carboxyl-terminal hydrolase, PF04780: Protein
           of unknown function (DUF629), PF04781: Protein of
           unknown function (DUF627)
          Length = 1136

 Score = 27.5 bits (58), Expect = 5.1
 Identities = 19/71 (26%), Positives = 36/71 (50%), Gaps = 3/71 (4%)
 Frame = +3

Query: 249 ADKKAKRPPT--DEEIKKYVK-QILEGANLEQITMKTVCKQVYSHYPDFDLAHKKDFIKA 419
           A+ K   P T     +K+  K ++LE   + + T + V K++ S +   D+  K+DF+K 
Sbjct: 149 AESKIASPETLVASTMKQVSKPKVLESEKIPE-TRQGVVKRLRSFWVGLDVKVKRDFMKV 207

Query: 420 TVKSCISDIRR 452
            +   +S + R
Sbjct: 208 NIAKLLSFVER 218


>At5g42060.1 68418.m05120 expressed protein
          Length = 92

 Score = 27.1 bits (57), Expect = 6.8
 Identities = 20/48 (41%), Positives = 29/48 (60%)
 Frame = +3

Query: 285 EIKKYVKQILEGANLEQITMKTVCKQVYSHYPDFDLAHKKDFIKATVK 428
           +IKK VK+ILE +NL +IT +   ++  S   D DL+  +D  K  VK
Sbjct: 18  KIKKTVKKILESSNLYKIT-EIKAREEASLKLDLDLS--QDPYKVIVK 62


>At1g02870.1 68414.m00252 expressed protein
          Length = 193

 Score = 27.1 bits (57), Expect = 6.8
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = +3

Query: 270 PPTDEEIKKYVKQILEGANLEQITMKT 350
           PPTD+ I K  + I  G+ LE+  +KT
Sbjct: 93  PPTDDPIAKEFEPIDSGSELEEDDLKT 119


>At5g50380.1 68418.m06240 exocyst subunit EXO70 family protein
           contains Pfam domain PF03081: Exo70 exocyst complex
           subunit;
          Length = 683

 Score = 26.6 bits (56), Expect = 9.0
 Identities = 14/65 (21%), Positives = 32/65 (49%)
 Frame = +3

Query: 279 DEEIKKYVKQILEGANLEQITMKTVCKQVYSHYPDFDLAHKKDFIKATVKSCISDIRR*G 458
           DE++KK+++ +     +  +  K +C +++S       + K+     T KSC+  +   G
Sbjct: 300 DEKMKKWIQAVKITVRVLLVGEKKICDEIFSS----SESSKEVCFNETTKSCVMQLLNFG 355

Query: 459 GSVDV 473
            +V +
Sbjct: 356 EAVAI 360


>At2g15170.1 68415.m01730 plant basic secretory protein (BSP) family
           protein similar to NtPRp27 [Nicotiana tabacum]
           GI:5360263; contains Pfam profile PF04450: Plant Basic
           Secretory Protein
          Length = 134

 Score = 26.6 bits (56), Expect = 9.0
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = -1

Query: 355 HTVFIVICSKLAPSRICFTYFFISSSVG 272
           H +F+VIC  LA S +    FF+  + G
Sbjct: 4   HEIFLVICLMLAVSMVNAVDFFVVDNTG 31


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,409,897
Number of Sequences: 28952
Number of extensions: 141292
Number of successful extensions: 391
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 385
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 391
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 848837888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)