Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_E05
         (680 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC11E3.07 |vma4||V-type ATPase subunit E|Schizosaccharomyces p...   111   7e-26
SPAC1B1.02c |||NAD/NADH kinase |Schizosaccharomyces pombe|chr 1|...    28   1.1  
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    27   1.9  
SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase Lkh1|Schi...    26   5.8  
SPBC215.10 |||haloacid dehalogenase-like hydrolase|Schizosacchar...    25   7.7  
SPBC21.04 |med8|sep15|mediator complex subunit Med8|Schizosaccha...    25   7.7  
SPCC4B3.04c |nte1||lysophospholipase|Schizosaccharomyces pombe|c...    25   7.7  

>SPAC11E3.07 |vma4||V-type ATPase subunit E|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 227

 Score =  111 bits (268), Expect = 7e-26
 Identities = 57/153 (37%), Positives = 92/153 (60%), Gaps = 1/153 (0%)
 Frame = +3

Query: 9   SNMLNQARLKVLKVREDHVRNVLDEARKRLAEVPKDTKLYSDLLTTLIVQALFQLMEPSV 188
           SN+LN++RL++L  ++  + ++     K+L  + +    Y+  +  LIVQA+  L EP  
Sbjct: 73  SNVLNKSRLEILNSKQKVIDDIFSRVEKKLDGIEQKKDAYTKFMADLIVQAMELLGEPVG 132

Query: 189 TIRVRQVDKSQVESILARAQQDYKTKIKK-DTQLKVDTESFLSPDTCGGVELVAARGRIK 365
            +  RQ D   V++ + +A +  K+K    D +L  +T+ FL+    GGV LV   G+I+
Sbjct: 133 IVYSRQRDAEIVKAAIPKATEVLKSKNGSIDYELDAETDDFLNDSVLGGVVLVGLGGKIR 192

Query: 366 ISNTLESRLELIAQQLLPEIRTALFGRNPNRKF 464
           + NTL +RLE++ ++ LPEIR  LFG NPNRKF
Sbjct: 193 VDNTLRARLEIVKEEALPEIRRLLFGENPNRKF 225


>SPAC1B1.02c |||NAD/NADH kinase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 537

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 16/38 (42%), Positives = 19/38 (50%)
 Frame = -3

Query: 309 GSSRCLPSTVCPS*SLSCNPVEL*QGSTLLVTCPLDGR 196
           G    L S +CP  SLS  P+ L    TL +  PLD R
Sbjct: 423 GIPAILISAICPH-SLSFRPIILPDSMTLRIVVPLDAR 459


>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 534

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 12/47 (25%), Positives = 20/47 (42%)
 Frame = -1

Query: 377 SVADLDASPSSNKFNSTTSVRRQEAXXXXXXXXXXXXXXXXXXLSSS 237
           +++   +SPSS+ F+STTS  +  +                   SSS
Sbjct: 342 TISSSSSSPSSSSFSSTTSSSKSSSSFSSTVSSSSSTSSSTLTSSSS 388


>SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase
           Lkh1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 690

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 13/41 (31%), Positives = 22/41 (53%)
 Frame = +2

Query: 134 SSYNTHCTGSIPVNGAIGDHPRPSSGQVTSRVDPC*SSTGL 256
           SS +T  T ++P+NGA   +P  +S  +    DP   + G+
Sbjct: 62  SSPSTTGTVAVPINGANAVYPSTNSVSLPQSYDPWLDANGV 102


>SPBC215.10 |||haloacid dehalogenase-like
           hydrolase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 302

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = +3

Query: 57  DHVRNVLDEARKRLAEVPKD 116
           D   N L+EA+KRLA +P D
Sbjct: 181 DDDTNGLEEAKKRLAGIPSD 200


>SPBC21.04 |med8|sep15|mediator complex subunit
           Med8|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 200

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 24/104 (23%), Positives = 42/104 (40%), Gaps = 6/104 (5%)
 Frame = +3

Query: 177 EPSVTIRVRQVDKSQVESILARAQQDYKTKIKKDTQLKVDTESFLSPDTCGGVELVAARG 356
           EP +T  +R     +VE   A   Q+Y+  I    + K   +++          ++    
Sbjct: 88  EPLLTTLLRTKALPEVEEWEANTLQEYEASISSQPKKKEANDAYQKDQLWDQARIIFMEE 147

Query: 357 RIK------ISNTLESRLELIAQQLLPEIRTALFGRNPNRKFTD 470
           R        ++   ES  E ++Q+ L EI  A   +N N+  TD
Sbjct: 148 RENYSWFDFVTRRQESEGEFVSQRQL-EIDRATEEQNANQMLTD 190


>SPCC4B3.04c |nte1||lysophospholipase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1316

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +2

Query: 365 DQQHFGIPSRVDRSTAPTGDSYSA 436
           D++H    S +DRSTA  GD  S+
Sbjct: 392 DKEHGNFVSDIDRSTANAGDLLSS 415


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,540,802
Number of Sequences: 5004
Number of extensions: 48838
Number of successful extensions: 148
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 146
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 148
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 313902888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)