Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0002_E05
(680 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0134 + 26805329-26805430,26807130-26807230,26807876-268080... 99 2e-21
05_05_0231 + 23488588-23488689,23488775-23488875,23489012-234891... 89 3e-18
01_01_0858 - 6699126-6699128,6699219-6699318,6700052-6700278,670... 80 2e-15
02_04_0312 - 21942310-21943356 32 0.48
11_05_0100 - 19056465-19056470,19057043-19057276,19058391-190585... 31 0.64
01_06_1701 - 39290537-39291077,39292110-39292801 28 7.9
>01_06_0134 +
26805329-26805430,26807130-26807230,26807876-26808032,
26808386-26808582,26809188-26809287,26809501-26809536
Length = 230
Score = 99 bits (238), Expect = 2e-21
Identities = 59/157 (37%), Positives = 94/157 (59%), Gaps = 11/157 (7%)
Frame = +3
Query: 9 SNMLNQARLKVLKVREDHVRNVLDEARKRLAEVPKDTKLYSDLLTTLIVQALFQLMEPSV 188
S LN +R+KVL+ ++D V ++ ++A K+L V + Y +LL L+VQ L +L EP+V
Sbjct: 71 SMQLNASRIKVLQAQDDLVNSMKEDATKQLLRVSHNHHEYKNLLKELVVQGLLRLKEPAV 130
Query: 189 TIRVRQVDKSQVESILARAQQDYKTKIK-KDTQLKVDTESFLSPDT---------C-GGV 335
+R R+ D VES+L A+ +Y +K + ++ VD + +L P C GGV
Sbjct: 131 LLRCRKEDHHHVESVLHSAKNEYASKAEVHHPEILVDHDVYLPPSPSSHDSHERFCSGGV 190
Query: 336 ELVAARGRIKISNTLESRLELIAQQLLPEIRTALFGR 446
L + G+I NTL++RLE++ ++ LPEIR LFG+
Sbjct: 191 VLASRDGKIVCENTLDARLEVVFRKKLPEIRKLLFGQ 227
>05_05_0231 +
23488588-23488689,23488775-23488875,23489012-23489168,
23489365-23489594,23489696-23489795,23489878-23489916
Length = 242
Score = 89.0 bits (211), Expect = 3e-18
Identities = 60/168 (35%), Positives = 92/168 (54%), Gaps = 22/168 (13%)
Frame = +3
Query: 9 SNMLNQARLKVLKVREDHVRNVLDEARKRLAEVPKDTKLYSDLLTTLIVQ---------- 158
S LN AR+KVL+ ++ V + ++A K L V KD Y +L LIVQ
Sbjct: 71 STQLNAARIKVLRAQDGVVGEMKEDAGKSLLRVTKDATAYRKVLKGLIVQRKDSEIIDQI 130
Query: 159 -ALFQLMEPSVTIRVRQVDKSQVESILARAQQDYKTKIKKD-TQLKVDTESFLSPDT--- 323
+L +L EPSV +R R+ D+ VES+L A+++Y K K + ++ +D + +L P
Sbjct: 131 QSLLRLREPSVVLRCREADRGHVESVLEAAKKEYAEKAKVNLPKILIDGKVYLPPPKTAR 190
Query: 324 ------C-GGVELVAARGRIKISNTLESRLELIAQQLLPEIRTALFGR 446
C GGV + + G+I NTL++R+E+ +Q LPEIR LF +
Sbjct: 191 DAHGPFCSGGVVIASQDGKIVCDNTLDARVEISFKQKLPEIRKKLFSQ 238
>01_01_0858 -
6699126-6699128,6699219-6699318,6700052-6700278,
6701032-6701188,6701422-6701522,6702147-6702251
Length = 230
Score = 79.8 bits (188), Expect = 2e-15
Identities = 54/159 (33%), Positives = 87/159 (54%), Gaps = 21/159 (13%)
Frame = +3
Query: 9 SNMLNQARLKVLKVREDHVRNVLDEARKRLAEVPKDTKLYSDLLTTLIVQ---------- 158
S LN +RL+VL+ ++D ++L+ A K L + +D +Y +LL IVQ
Sbjct: 72 SKQLNASRLEVLQAQDDLAMSMLEAAGKELLYITRDHHVYKNLLRIFIVQDKLTKKNPEQ 131
Query: 159 ALFQLMEPSVTIRVRQVDKSQVESILARAQQDYKTKIK-KDTQLKVDTESFLSP------ 317
+L +L EP+V +R R+ D+ VES+L A+ +Y K ++ VD +L P
Sbjct: 132 SLLRLKEPAVILRCRKEDRELVESVLESAKNEYADKANIYPPEIMVDRNVYLPPAPSHYE 191
Query: 318 ---DTC-GGVELVAARGRIKISNTLESRLELIAQQLLPE 422
+C GGV L + G+I NTL++RLE++ ++ LPE
Sbjct: 192 AHGPSCSGGVVLASRDGKIVCENTLDARLEVVFRKKLPE 230
>02_04_0312 - 21942310-21943356
Length = 348
Score = 31.9 bits (69), Expect = 0.48
Identities = 21/76 (27%), Positives = 35/76 (46%), Gaps = 5/76 (6%)
Frame = -2
Query: 373 LLILMRPLAATSSTPPQVSGDR-----KLSVSTFNCVSFLIFVL*SC*ALARIDSTCDLS 209
+L+ + P+AA S+PP+ GD +S+S F V F +F++ A R+ D
Sbjct: 12 VLLAIAPVAAAPSSPPRSGGDSLSFSDVISISFFMAVFFPVFIVLLAFACLRLFRPLDDD 71
Query: 208 T*RTRMVTDGSINWNR 161
+ S W+R
Sbjct: 72 DGEPALADTSSSEWSR 87
>11_05_0100 -
19056465-19056470,19057043-19057276,19058391-19058546,
19059639-19059763,19059912-19059983,19060080-19060184,
19060691-19060745,19061576-19061656,19062806-19062869,
19064715-19064782,19064947-19065033,19066121-19066285,
19066310-19066429,19066485-19066607,19066738-19067019,
19067936-19068075,19068234-19068335,19068802-19068874,
19069061-19069171
Length = 722
Score = 31.5 bits (68), Expect = 0.64
Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
Frame = -2
Query: 451 GLRPNSAVRISGRSC*AINSRRDSKVLLILMRPLAATSS--TPPQVSGDRKLSV 296
G+ NS + I C A+ S+ D +LIL P+A + + P ++ G RK +
Sbjct: 332 GMNDNSKILIDNSCCLALYSKLDEDQVLILQSPVALSKAVKNPVELDGLRKAHI 385
>01_06_1701 - 39290537-39291077,39292110-39292801
Length = 410
Score = 27.9 bits (59), Expect = 7.9
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = +2
Query: 353 GTHQDQQHFGIPSRVDRSTAPTGDSYSA 436
G D FG+ R D +TAP+ ++SA
Sbjct: 34 GGEDDAAAFGVSCRADEATAPSNPAFSA 61
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,352,496
Number of Sequences: 37544
Number of extensions: 307796
Number of successful extensions: 797
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 767
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 793
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1721314888
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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