Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_E05
         (680 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_52835| Best HMM Match : vATP-synt_E (HMM E-Value=2.1e-05)           49   1e-07
SB_50642| Best HMM Match : Spectrin (HMM E-Value=1)                    32   0.49 
SB_45157| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.1  
SB_50216| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.0  
SB_25898| Best HMM Match : rve (HMM E-Value=1)                         29   2.6  
SB_43203| Best HMM Match : She9_MDM33 (HMM E-Value=0.27)               29   4.6  
SB_20174| Best HMM Match : DedA (HMM E-Value=3.7)                      28   8.0  
SB_56523| Best HMM Match : Pox_A_type_inc (HMM E-Value=0)              28   8.0  
SB_44483| Best HMM Match : RF-1 (HMM E-Value=9e-39)                    28   8.0  
SB_13875| Best HMM Match : rve (HMM E-Value=4.5e-15)                   28   8.0  

>SB_52835| Best HMM Match : vATP-synt_E (HMM E-Value=2.1e-05)
          Length = 288

 Score = 49.2 bits (112), Expect = 3e-06
 Identities = 25/61 (40%), Positives = 36/61 (59%)
 Frame = +3

Query: 45  KVREDHVRNVLDEARKRLAEVPKDTKLYSDLLTTLIVQALFQLMEPSVTIRVRQVDKSQV 224
           K  E   + +LDEA +RL +V +D   Y  ++  LI Q L+QL+E  V IR R+ D S V
Sbjct: 68  KAEEIDAKRILDEAVERLGKVTQDQGKYQQIIQGLITQGLYQLLESKVLIRCRKQDVSLV 127

Query: 225 E 227
           +
Sbjct: 128 K 128



 Score = 40.7 bits (91), Expect(2) = 1e-07
 Identities = 17/28 (60%), Positives = 24/28 (85%)
 Frame = +3

Query: 327 GGVELVAARGRIKISNTLESRLELIAQQ 410
           GG+EL A +G+IK+ NTLESRLE++ +Q
Sbjct: 234 GGIELHAKQGKIKVVNTLESRLEMLGRQ 261



 Score = 32.7 bits (71), Expect(2) = 1e-07
 Identities = 12/31 (38%), Positives = 21/31 (67%)
 Frame = +3

Query: 228 SILARAQQDYKTKIKKDTQLKVDTESFLSPD 320
           ++   A ++YK + KK+ +L VD ++FL PD
Sbjct: 173 AVFGPATEEYKKQTKKEIELTVDEQNFLGPD 203


>SB_50642| Best HMM Match : Spectrin (HMM E-Value=1)
          Length = 739

 Score = 31.9 bits (69), Expect = 0.49
 Identities = 12/26 (46%), Positives = 18/26 (69%)
 Frame = +3

Query: 30  RLKVLKVREDHVRNVLDEARKRLAEV 107
           R+  LK +ED ++N+LDE R +  EV
Sbjct: 147 RINTLKTKEDEIKNILDEQRGKAEEV 172


>SB_45157| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2870

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 21/57 (36%), Positives = 27/57 (47%)
 Frame = -3

Query: 378  KCC*S*CVP*QQQVQLHHKCPETGSSRCLPSTVCPS*SLSCNPVEL*QGSTLLVTCP 208
            KCC +  VP  Q    H  CP   S+ CLP   CPS   + + V   Q +T   +CP
Sbjct: 2229 KCC-AVVVPSNQAEATHSSCPSVCSTTCLP--FCPSKCCTSSTVTPVQPTT--SSCP 2280


>SB_50216| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3293

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 18/82 (21%), Positives = 42/82 (51%), Gaps = 4/82 (4%)
 Frame = +3

Query: 51   REDHVRNVLDEARKRLAEVPKDTKLYSDLLT----TLIVQALFQLMEPSVTIRVRQVDKS 218
            RE+++  V++E+RKR A+  K    +SD ++     ++V+  +     S+    R   + 
Sbjct: 1231 REEYLSRVMNESRKRFADEHKRHSFHSDYMSRNKEAVLVKPAWSSSRSSLHDEQRSPPEE 1290

Query: 219  QVESILARAQQDYKTKIKKDTQ 284
            Q ES+    ++ ++ + ++  Q
Sbjct: 1291 QRESLNEEKRRSFQEENRRSFQ 1312


>SB_25898| Best HMM Match : rve (HMM E-Value=1)
          Length = 714

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 17/61 (27%), Positives = 31/61 (50%)
 Frame = +3

Query: 162 LFQLMEPSVTIRVRQVDKSQVESILARAQQDYKTKIKKDTQLKVDTESFLSPDTCGGVEL 341
           + QLM  SV +    V  S+ +S++     + + K+K DT +  D    +S D C  +E+
Sbjct: 133 MMQLMPASVELGSVDVSASRNKSMINVTLSNRQVKVKADTVVHGDITPLVSCDACLDLEV 192

Query: 342 V 344
           +
Sbjct: 193 L 193


>SB_43203| Best HMM Match : She9_MDM33 (HMM E-Value=0.27)
          Length = 447

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = +3

Query: 30  RLKVLKVREDHVRNVLDEARKRLAEVPKDTKLYSDLLT 143
           R++  K   D + + L E R+RL   P+D + Y  L T
Sbjct: 120 RVQTAKKELDFIHSQLSEVRRRLDRTPRDDERYLTLAT 157


>SB_20174| Best HMM Match : DedA (HMM E-Value=3.7)
          Length = 228

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 7/37 (18%), Positives = 23/37 (62%)
 Frame = -1

Query: 122 LGIFRHFSQALASLV*HITYVIFTYFEHLETSLVQHV 12
           +G  +H +  +   + H+T+ +  + +HL+++++ H+
Sbjct: 120 IGHLQHLTSTVIGHLQHLTFTVICHLQHLKSTVIGHL 156


>SB_56523| Best HMM Match : Pox_A_type_inc (HMM E-Value=0)
          Length = 2858

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 11/36 (30%), Positives = 23/36 (63%)
 Frame = +3

Query: 24   QARLKVLKVREDHVRNVLDEARKRLAEVPKDTKLYS 131
            QA L+  +  +D+++   D  +KRLA++  + ++YS
Sbjct: 2459 QAELEAARQSKDNLQEDFDNLQKRLAQLEAEQEIYS 2494


>SB_44483| Best HMM Match : RF-1 (HMM E-Value=9e-39)
          Length = 309

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 17/65 (26%), Positives = 34/65 (52%), Gaps = 2/65 (3%)
 Frame = +3

Query: 48  VREDHVRNVLDEARKRLAEVPKDTKLYSDLLTTL--IVQALFQLMEPSVTIRVRQVDKSQ 221
           V +DH+RNVL + R     + +   L +D   TL   + +L  L+E   T+  +Q ++ +
Sbjct: 84  VLDDHLRNVLQQHRTISDRLSRPQDLATDEHRTLSKTLSSLAPLVELIKTLEAKQKEQEE 143

Query: 222 VESIL 236
           +  ++
Sbjct: 144 LSDLI 148


>SB_13875| Best HMM Match : rve (HMM E-Value=4.5e-15)
          Length = 1216

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 19/60 (31%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
 Frame = +3

Query: 372  NTLESRLELIAQQLLPEIRTALFGRNPNRKFTD*IKQR*SFRTHTRYF-TNNLFKRKLSY 548
            +T++ +L +   Q LP+  T LFG++      + I  R S R H   F T ++  RK++Y
Sbjct: 1075 DTMQRKLGVEFHQGLPDSITDLFGKHDTPGMGESIHPRISSRYHHPIFVTKSIPLRKITY 1134


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,307,358
Number of Sequences: 59808
Number of extensions: 370860
Number of successful extensions: 988
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 867
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 988
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1757375282
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)