Samia BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_E04
         (568 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A0Q254 Cluster: CRISPR-associated helicase Cas3; n=2; C...    36   0.87 
UniRef50_Q7QZM3 Cluster: GLP_680_59866_66603; n=1; Giardia lambl...    33   3.5  
UniRef50_Q61K92 Cluster: Putative uncharacterized protein CBG094...    33   4.7  
UniRef50_Q241T5 Cluster: Glycosyl hydrolases family 38 protein; ...    32   8.1  

>UniRef50_A0Q254 Cluster: CRISPR-associated helicase Cas3; n=2;
           Clostridium|Rep: CRISPR-associated helicase Cas3 -
           Clostridium novyi (strain NT)
          Length = 873

 Score = 35.5 bits (78), Expect = 0.87
 Identities = 17/46 (36%), Positives = 25/46 (54%)
 Frame = +2

Query: 404 LNINFACIALKNVYFQINNDWSLAIIKLKNHNRTCEFLMFYIDFLH 541
           +NINF  I +KN YF+   D     I+  N N +C   + Y+D+ H
Sbjct: 94  ININFQTIKMKNKYFKDKKD-----IECSNSNHSCLSSLIYMDYYH 134


>UniRef50_Q7QZM3 Cluster: GLP_680_59866_66603; n=1; Giardia lamblia
            ATCC 50803|Rep: GLP_680_59866_66603 - Giardia lamblia
            ATCC 50803
          Length = 2245

 Score = 33.5 bits (73), Expect = 3.5
 Identities = 20/61 (32%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
 Frame = +2

Query: 377  IDXIVENSFLNINFACIALKNVYFQINNDWSLAIIKLKNH-NRTCEFLMFYIDFLHGNPY 553
            +D I+ +SF N+  A +  KN+    N DWS  I  L  +   +   + F +  LHGN +
Sbjct: 1362 LDSILSDSFENVLHALVDEKNILHIHNFDWSEKISPLDVYIGSSQNAVEFSLRLLHGNAH 1421

Query: 554  N 556
            N
Sbjct: 1422 N 1422


>UniRef50_Q61K92 Cluster: Putative uncharacterized protein CBG09474;
           n=1; Caenorhabditis briggsae|Rep: Putative
           uncharacterized protein CBG09474 - Caenorhabditis
           briggsae
          Length = 512

 Score = 33.1 bits (72), Expect = 4.7
 Identities = 15/43 (34%), Positives = 22/43 (51%)
 Frame = -3

Query: 203 CRQFPNIGNYRLFNFLLFVQQMYGSSPSRPSYIYFETNTKKSF 75
           CR    + N+ LFN  L V + +G++        F+ N KKSF
Sbjct: 272 CRALNAVNNHELFNVKLSVYESFGNTKIPTEITLFDGNLKKSF 314


>UniRef50_Q241T5 Cluster: Glycosyl hydrolases family 38 protein;
           n=3; Tetrahymena thermophila SB210|Rep: Glycosyl
           hydrolases family 38 protein - Tetrahymena thermophila
           SB210
          Length = 1197

 Score = 32.3 bits (70), Expect = 8.1
 Identities = 17/65 (26%), Positives = 31/65 (47%), Gaps = 8/65 (12%)
 Frame = +2

Query: 338 ILEGPSSYLNIFFIDXIVENSFLNI--------NFACIALKNVYFQINNDWSLAIIKLKN 493
           +L+ P +++N+F    ++ N +LN+        ++  + L N+Y   N  W    IK K 
Sbjct: 185 LLQLPENFINLFETLSLISNYYLNLMIYLKQFPDYFTLRLNNIYDYENTCWGCLKIKYKY 244

Query: 494 HNRTC 508
           H   C
Sbjct: 245 HQIAC 249


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 457,300,412
Number of Sequences: 1657284
Number of extensions: 8392271
Number of successful extensions: 19818
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 18905
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19812
length of database: 575,637,011
effective HSP length: 96
effective length of database: 416,537,747
effective search space used: 38321472724
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)