Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_E04
         (568 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual        27   1.5  
SPCC962.05 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||...    26   4.4  
SPAC19G12.11 |coq9||ubiquinone biosynthesis protein Coq9 |Schizo...    25   5.9  

>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 4717

 Score = 27.5 bits (58), Expect = 1.5
 Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 3/48 (6%)
 Frame = +2

Query: 350  PSSYLNIF---FIDXIVENSFLNINFACIALKNVYFQINNDWSLAIIK 484
            P S++N F   +++ + E   + I  AC      Y Q+N DW L IIK
Sbjct: 1693 PRSFINRFSVVYVEALKEKDMIEIA-ACN-----YHQVNEDWRLKIIK 1734


>SPCC962.05 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 536

 Score = 25.8 bits (54), Expect = 4.4
 Identities = 10/32 (31%), Positives = 17/32 (53%)
 Frame = +2

Query: 464 WSLAIIKLKNHNRTCEFLMFYIDFLHGNPYNL 559
           W+L  +K  N+     FL+ ++    G+P NL
Sbjct: 388 WTLRCMKNLNNITATSFLLMHVSLFLGSPMNL 419


>SPAC19G12.11 |coq9||ubiquinone biosynthesis protein Coq9
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 250

 Score = 25.4 bits (53), Expect = 5.9
 Identities = 13/46 (28%), Positives = 23/46 (50%)
 Frame = -1

Query: 166 LISYYSYNRCMVQVQADPHISTLKQIQKRALDLIATYKKLGRDSMQ 29
           LISY+   +        PH++T+ +   R + LI +  +  RD +Q
Sbjct: 93  LISYFFLKQRYALSSLKPHLTTIPETSGRVVQLIWSRLQGNRDIVQ 138


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,048,403
Number of Sequences: 5004
Number of extensions: 38891
Number of successful extensions: 77
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 73
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 77
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 240047038
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)